miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 55103 0.68 0.970106
Target:  5'- gCACACCAgGCaCGGcUGCGCggggUCGugcagcUCGGg -3'
miRNA:   3'- -GUGUGGUgCG-GUC-AUGUGa---AGU------AGCC- -5'
23705 5' -51.4 NC_005261.1 + 43777 0.68 0.970106
Target:  5'- gCGCGCCcuCGCCGccgccgGCGCcgUCGUCGGc -3'
miRNA:   3'- -GUGUGGu-GCGGUca----UGUGa-AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 70772 0.67 0.972446
Target:  5'- gACGCCGCGCCAaagaccacGUACGCcgagaacgCGGg -3'
miRNA:   3'- gUGUGGUGCGGU--------CAUGUGaagua---GCC- -5'
23705 5' -51.4 NC_005261.1 + 79576 0.67 0.972729
Target:  5'- aCGCGCCGCGCCAcGUccuccaggcacccGCGCUggGUCu- -3'
miRNA:   3'- -GUGUGGUGCGGU-CA-------------UGUGAagUAGcc -5'
23705 5' -51.4 NC_005261.1 + 80133 0.67 0.973009
Target:  5'- cCGCGCCGCGCC---GCGCUcgccgcgcUCA-CGGg -3'
miRNA:   3'- -GUGUGGUGCGGucaUGUGA--------AGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 84678 0.67 0.973009
Target:  5'- gCGCGCCGCgGCCAGcugcgGCGCgcccgCA-CGGg -3'
miRNA:   3'- -GUGUGGUG-CGGUCa----UGUGaa---GUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 2952 0.67 0.975703
Target:  5'- gCACGCCGC-CCAGgcgGCGCgggCGcugCGGg -3'
miRNA:   3'- -GUGUGGUGcGGUCa--UGUGaa-GUa--GCC- -5'
23705 5' -51.4 NC_005261.1 + 32460 0.67 0.975703
Target:  5'- cCACGCCGCGCCcuccgcgaGCGCgcCGUCGa -3'
miRNA:   3'- -GUGUGGUGCGGuca-----UGUGaaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 88210 0.67 0.980272
Target:  5'- gGCACCGCcgcagcaGCCGGUGCAgcagcgCGUCGa -3'
miRNA:   3'- gUGUGGUG-------CGGUCAUGUgaa---GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 85376 0.67 0.980493
Target:  5'- gCGCAgCuCGCCA--GCGCUUCcgCGGc -3'
miRNA:   3'- -GUGUgGuGCGGUcaUGUGAAGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 39169 0.67 0.980493
Target:  5'- gACACCGCGgCAG-GCGCgucggCGUCGc -3'
miRNA:   3'- gUGUGGUGCgGUCaUGUGaa---GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 84835 0.67 0.980493
Target:  5'- cCGCGCCGCGgcCCAGgcGCACUagcggCcgCGGg -3'
miRNA:   3'- -GUGUGGUGC--GGUCa-UGUGAa----GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 45037 0.67 0.980493
Target:  5'- gCGCGCagcgCGCGCCAGUGCGCcggCGUgagcaGGa -3'
miRNA:   3'- -GUGUG----GUGCGGUCAUGUGaa-GUAg----CC- -5'
23705 5' -51.4 NC_005261.1 + 96977 0.67 0.982402
Target:  5'- gCGCGCCACGaCgAGUcccuuggccgagcACACUUCGcagugCGGu -3'
miRNA:   3'- -GUGUGGUGC-GgUCA-------------UGUGAAGUa----GCC- -5'
23705 5' -51.4 NC_005261.1 + 29231 0.67 0.982605
Target:  5'- aGCACCAgGCCgggcaGGUucuccgcuagcaGCGCcgCGUCGGg -3'
miRNA:   3'- gUGUGGUgCGG-----UCA------------UGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 61696 0.67 0.982605
Target:  5'- gACGCCG-GCCuGUu--CUUCGUCGGc -3'
miRNA:   3'- gUGUGGUgCGGuCAuguGAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 99038 0.67 0.982605
Target:  5'- gCGCGCgGCGgCAGc-CGCcUCAUCGGc -3'
miRNA:   3'- -GUGUGgUGCgGUCauGUGaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 76014 0.67 0.982605
Target:  5'- gCGCGCCuGCGgCAGcgGCACcgUCGUgGGg -3'
miRNA:   3'- -GUGUGG-UGCgGUCa-UGUGa-AGUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 69325 0.67 0.982605
Target:  5'- uCGCGCUAUGCCAGUuccugcugucGCGCUggggCAU-GGc -3'
miRNA:   3'- -GUGUGGUGCGGUCA----------UGUGAa---GUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 58186 0.67 0.982605
Target:  5'- gUACAgCUugGCCAGcGCguuGCUgagCAUCGGc -3'
miRNA:   3'- -GUGU-GGugCGGUCaUG---UGAa--GUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.