miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 109634 0.66 0.99069
Target:  5'- gACGCCGCgGCCGGggGCGCcugggCcgCGGc -3'
miRNA:   3'- gUGUGGUG-CGGUCa-UGUGaa---GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 70724 0.66 0.99069
Target:  5'- gCGCGCgGCGCCAG-GCGCggugagcgCGUCa- -3'
miRNA:   3'- -GUGUGgUGCGGUCaUGUGaa------GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 68974 0.66 0.99069
Target:  5'- gACACaCGCGCCGGcGCA--UCA-CGGa -3'
miRNA:   3'- gUGUG-GUGCGGUCaUGUgaAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 62232 0.66 0.99069
Target:  5'- gCGCACgACGCCGugGCGCUgCAguacgagCGGg -3'
miRNA:   3'- -GUGUGgUGCGGUcaUGUGAaGUa------GCC- -5'
23705 5' -51.4 NC_005261.1 + 74103 0.66 0.99069
Target:  5'- aGCGCCGCGuCCAgcGUGCGCauguuucgCGUCGcGg -3'
miRNA:   3'- gUGUGGUGC-GGU--CAUGUGaa------GUAGC-C- -5'
23705 5' -51.4 NC_005261.1 + 86512 0.66 0.987915
Target:  5'- aGCGCCGCGCggcagcagCGGcGCGCUaCAUCGc -3'
miRNA:   3'- gUGUGGUGCG--------GUCaUGUGAaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 3783 0.66 0.987915
Target:  5'- aGCGCCGgGUCuGGUgcgaACGCggCGUCGGa -3'
miRNA:   3'- gUGUGGUgCGG-UCA----UGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 44069 0.66 0.98454
Target:  5'- gGCGCCagcccgaacucGCGCCGGUAgGCgucgaUCGUcCGGc -3'
miRNA:   3'- gUGUGG-----------UGCGGUCAUgUGa----AGUA-GCC- -5'
23705 5' -51.4 NC_005261.1 + 60836 0.66 0.98454
Target:  5'- gGCGCCGcCGCCAGUgGCGCcgCcgCGc -3'
miRNA:   3'- gUGUGGU-GCGGUCA-UGUGaaGuaGCc -5'
23705 5' -51.4 NC_005261.1 + 29782 0.66 0.98454
Target:  5'- gGCACCAgCGCCucGGgcgGCACcgaGUCGGc -3'
miRNA:   3'- gUGUGGU-GCGG--UCa--UGUGaagUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 35664 0.66 0.98562
Target:  5'- cCGCGCCcgcCGCCAGggcguucuucaggGCGCUUgCcgCGGa -3'
miRNA:   3'- -GUGUGGu--GCGGUCa------------UGUGAA-GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 90690 0.66 0.986307
Target:  5'- gGCGCCGCGUCG----GCggCGUCGGg -3'
miRNA:   3'- gUGUGGUGCGGUcaugUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 67343 0.66 0.986307
Target:  5'- gACACCACGCC-GUgggccagccgccGCGCggCGggCGGg -3'
miRNA:   3'- gUGUGGUGCGGuCA------------UGUGaaGUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 43545 0.66 0.986307
Target:  5'- gCGCGCCugGCCucgGCGCUcgcgCA-CGGc -3'
miRNA:   3'- -GUGUGGugCGGucaUGUGAa---GUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 71683 0.66 0.986307
Target:  5'- cCGCGCUcagcgaGCGCCGGUugauGCGCUUCAcCa- -3'
miRNA:   3'- -GUGUGG------UGCGGUCA----UGUGAAGUaGcc -5'
23705 5' -51.4 NC_005261.1 + 34616 0.66 0.986307
Target:  5'- aGCGCCAC-CCAGgcCGCgggccgUCuUCGGu -3'
miRNA:   3'- gUGUGGUGcGGUCauGUGa-----AGuAGCC- -5'
23705 5' -51.4 NC_005261.1 + 30877 0.66 0.986307
Target:  5'- gCAgGCCGCGCCGaaggGCAgcgCGUCGGc -3'
miRNA:   3'- -GUgUGGUGCGGUca--UGUgaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 18646 0.66 0.986307
Target:  5'- gCGCGCCcCGCCcauGUGCugUUUG-CGGc -3'
miRNA:   3'- -GUGUGGuGCGGu--CAUGugAAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 124314 0.66 0.986307
Target:  5'- aGgGCCACGUCGGcgaaGCACUcgcggUCGUCGa -3'
miRNA:   3'- gUgUGGUGCGGUCa---UGUGA-----AGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 66902 0.66 0.987915
Target:  5'- uGCGCgGCgGCCAgGUGCGCgcgaaaGUCGGc -3'
miRNA:   3'- gUGUGgUG-CGGU-CAUGUGaag---UAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.