miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 62269 0.69 0.943379
Target:  5'- cCGCGCCGCGCCGGcGCcCgUCGU-GGa -3'
miRNA:   3'- -GUGUGGUGCGGUCaUGuGaAGUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 63086 0.72 0.833639
Target:  5'- gCGCACCGCGCCAccGUcggcggcGCGCggagcccugugaccUUCGUCGGc -3'
miRNA:   3'- -GUGUGGUGCGGU--CA-------UGUG--------------AAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 64853 0.77 0.597978
Target:  5'- aACAUCguGCGCCAGUACGC--CAUCGGc -3'
miRNA:   3'- gUGUGG--UGCGGUCAUGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 66902 0.66 0.987915
Target:  5'- uGCGCgGCgGCCAgGUGCGCgcgaaaGUCGGc -3'
miRNA:   3'- gUGUGgUG-CGGU-CAUGUGaag---UAGCC- -5'
23705 5' -51.4 NC_005261.1 + 67008 0.7 0.922697
Target:  5'- cCGCGCCGCGacCCGGUACGCguggUAggCGGc -3'
miRNA:   3'- -GUGUGGUGC--GGUCAUGUGaa--GUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 67343 0.66 0.986307
Target:  5'- gACACCACGCC-GUgggccagccgccGCGCggCGggCGGg -3'
miRNA:   3'- gUGUGGUGCGGuCA------------UGUGaaGUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 68708 0.65 0.991532
Target:  5'- gGCAUCACGCCgccgucagacgacgAGUAUGCggaCGUCGa -3'
miRNA:   3'- gUGUGGUGCGG--------------UCAUGUGaa-GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 68974 0.66 0.99069
Target:  5'- gACACaCGCGCCGGcGCA--UCA-CGGa -3'
miRNA:   3'- gUGUG-GUGCGGUCaUGUgaAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 69325 0.67 0.982605
Target:  5'- uCGCGCUAUGCCAGUuccugcugucGCGCUggggCAU-GGc -3'
miRNA:   3'- -GUGUGGUGCGGUCA----------UGUGAa---GUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 69397 0.68 0.95626
Target:  5'- uCGgGCCGCGCgGGcGCcgcgGCUUCGUUGGc -3'
miRNA:   3'- -GUgUGGUGCGgUCaUG----UGAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 69517 0.67 0.982605
Target:  5'- gGCugUGCGCCGucGUGCGCUgcg-CGGa -3'
miRNA:   3'- gUGugGUGCGGU--CAUGUGAaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 70724 0.66 0.99069
Target:  5'- gCGCGCgGCGCCAG-GCGCggugagcgCGUCa- -3'
miRNA:   3'- -GUGUGgUGCGGUCaUGUGaa------GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 70772 0.67 0.972446
Target:  5'- gACGCCGCGCCAaagaccacGUACGCcgagaacgCGGg -3'
miRNA:   3'- gUGUGGUGCGGU--------CAUGUGaagua---GCC- -5'
23705 5' -51.4 NC_005261.1 + 71683 0.66 0.986307
Target:  5'- cCGCGCUcagcgaGCGCCGGUugauGCGCUUCAcCa- -3'
miRNA:   3'- -GUGUGG------UGCGGUCA----UGUGAAGUaGcc -5'
23705 5' -51.4 NC_005261.1 + 72375 0.68 0.960068
Target:  5'- gCGCGCCAcCGCCGGcGCGuCguaGUCGGc -3'
miRNA:   3'- -GUGUGGU-GCGGUCaUGU-GaagUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 74103 0.66 0.99069
Target:  5'- aGCGCCGCGuCCAgcGUGCGCauguuucgCGUCGcGg -3'
miRNA:   3'- gUGUGGUGC-GGU--CAUGUGaa------GUAGC-C- -5'
23705 5' -51.4 NC_005261.1 + 76014 0.67 0.982605
Target:  5'- gCGCGCCuGCGgCAGcgGCACcgUCGUgGGg -3'
miRNA:   3'- -GUGUGG-UGCgGUCa-UGUGa-AGUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 76092 0.68 0.966986
Target:  5'- gGCGCCGCGCgGGcGCGCggCGgccccgCGGu -3'
miRNA:   3'- gUGUGGUGCGgUCaUGUGaaGUa-----GCC- -5'
23705 5' -51.4 NC_005261.1 + 77276 0.69 0.947919
Target:  5'- gCGCGCUGCGCC-GUGCGCUgcuUCGc -3'
miRNA:   3'- -GUGUGGUGCGGuCAUGUGAaguAGCc -5'
23705 5' -51.4 NC_005261.1 + 77691 0.66 0.98454
Target:  5'- aCACGCCGCGCguGgcgGCGCacgg-CGGu -3'
miRNA:   3'- -GUGUGGUGCGguCa--UGUGaaguaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.