miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 34616 0.66 0.986307
Target:  5'- aGCGCCAC-CCAGgcCGCgggccgUCuUCGGu -3'
miRNA:   3'- gUGUGGUGcGGUCauGUGa-----AGuAGCC- -5'
23705 5' -51.4 NC_005261.1 + 34927 0.69 0.947031
Target:  5'- cCGCGCCcguCGCCAGggcguccagcugGCGCaagacgUCGUCGGc -3'
miRNA:   3'- -GUGUGGu--GCGGUCa-----------UGUGa-----AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 35664 0.66 0.98562
Target:  5'- cCGCGCCcgcCGCCAGggcguucuucaggGCGCUUgCcgCGGa -3'
miRNA:   3'- -GUGUGGu--GCGGUCa------------UGUGAA-GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 38741 0.71 0.89116
Target:  5'- gCACAUgCGCGCCAGcACGCUgacCGUCGu -3'
miRNA:   3'- -GUGUG-GUGCGGUCaUGUGAa--GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 39169 0.67 0.980493
Target:  5'- gACACCGCGgCAG-GCGCgucggCGUCGc -3'
miRNA:   3'- gUGUGGUGCgGUCaUGUGaa---GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 42610 0.69 0.943379
Target:  5'- gCGCGCUGCGCCGGcGCGCUgcuagcCGGc -3'
miRNA:   3'- -GUGUGGUGCGGUCaUGUGAagua--GCC- -5'
23705 5' -51.4 NC_005261.1 + 43545 0.66 0.986307
Target:  5'- gCGCGCCugGCCucgGCGCUcgcgCA-CGGc -3'
miRNA:   3'- -GUGUGGugCGGucaUGUGAa---GUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 43777 0.68 0.970106
Target:  5'- gCGCGCCcuCGCCGccgccgGCGCcgUCGUCGGc -3'
miRNA:   3'- -GUGUGGu-GCGGUca----UGUGa-AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 44069 0.66 0.98454
Target:  5'- gGCGCCagcccgaacucGCGCCGGUAgGCgucgaUCGUcCGGc -3'
miRNA:   3'- gUGUGG-----------UGCGGUCAUgUGa----AGUA-GCC- -5'
23705 5' -51.4 NC_005261.1 + 45037 0.67 0.980493
Target:  5'- gCGCGCagcgCGCGCCAGUGCGCcggCGUgagcaGGa -3'
miRNA:   3'- -GUGUG----GUGCGGUCAUGUGaa-GUAg----CC- -5'
23705 5' -51.4 NC_005261.1 + 46644 0.7 0.916892
Target:  5'- gGCGCuCACGCCGGcgGCGCaaagUCGUCa- -3'
miRNA:   3'- gUGUG-GUGCGGUCa-UGUGa---AGUAGcc -5'
23705 5' -51.4 NC_005261.1 + 47166 0.69 0.943379
Target:  5'- cCACGCCAagauCGCCGacccgGCGCUggaCAUCGGc -3'
miRNA:   3'- -GUGUGGU----GCGGUca---UGUGAa--GUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 51652 0.68 0.960068
Target:  5'- -cCGCCGCGCCc-UGCA--UCAUCGGc -3'
miRNA:   3'- guGUGGUGCGGucAUGUgaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 55103 0.68 0.970106
Target:  5'- gCACACCAgGCaCGGcUGCGCggggUCGugcagcUCGGg -3'
miRNA:   3'- -GUGUGGUgCG-GUC-AUGUGa---AGU------AGCC- -5'
23705 5' -51.4 NC_005261.1 + 56234 0.66 0.98454
Target:  5'- uGC-CCGCGCCAGcaaGCGCggCG-CGGa -3'
miRNA:   3'- gUGuGGUGCGGUCa--UGUGaaGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 58186 0.67 0.982605
Target:  5'- gUACAgCUugGCCAGcGCguuGCUgagCAUCGGc -3'
miRNA:   3'- -GUGU-GGugCGGUCaUG---UGAa--GUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 60836 0.66 0.98454
Target:  5'- gGCGCCGcCGCCAGUgGCGCcgCcgCGc -3'
miRNA:   3'- gUGUGGU-GCGGUCA-UGUGaaGuaGCc -5'
23705 5' -51.4 NC_005261.1 + 61329 0.73 0.792332
Target:  5'- cCGCGCCugGCCGGUgccgcgcgagGCGCUggcgCGGa -3'
miRNA:   3'- -GUGUGGugCGGUCA----------UGUGAaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 61696 0.67 0.982605
Target:  5'- gACGCCG-GCCuGUu--CUUCGUCGGc -3'
miRNA:   3'- gUGUGGUgCGGuCAuguGAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 62232 0.66 0.99069
Target:  5'- gCGCACgACGCCGugGCGCUgCAguacgagCGGg -3'
miRNA:   3'- -GUGUGgUGCGGUcaUGUGAaGUa------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.