miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 2952 0.67 0.975703
Target:  5'- gCACGCCGC-CCAGgcgGCGCgggCGcugCGGg -3'
miRNA:   3'- -GUGUGGUGcGGUCa--UGUGaa-GUa--GCC- -5'
23705 5' -51.4 NC_005261.1 + 3783 0.66 0.987915
Target:  5'- aGCGCCGgGUCuGGUgcgaACGCggCGUCGGa -3'
miRNA:   3'- gUGUGGUgCGG-UCA----UGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 8147 0.69 0.947919
Target:  5'- gGCGCCGCGCCAGcgGCucguACUg---CGGg -3'
miRNA:   3'- gUGUGGUGCGGUCa-UG----UGAaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 11934 0.71 0.89116
Target:  5'- --aGCCGCGCCAGcGCGCUcgccUCG-CGGu -3'
miRNA:   3'- gugUGGUGCGGUCaUGUGA----AGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 15545 0.69 0.933545
Target:  5'- uCAUACUccaGCCGGUACucgUCGUCGGc -3'
miRNA:   3'- -GUGUGGug-CGGUCAUGugaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 18646 0.66 0.986307
Target:  5'- gCGCGCCcCGCCcauGUGCugUUUG-CGGc -3'
miRNA:   3'- -GUGUGGuGCGGu--CAUGugAAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 19413 0.75 0.692643
Target:  5'- gCACGCCGCGCU-GUGCuuCUgCGUCGGg -3'
miRNA:   3'- -GUGUGGUGCGGuCAUGu-GAaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 20144 0.67 0.982605
Target:  5'- cUACGCCGucugcggcgUGCCGGUGCACUgcgcgcacuUCGUgaCGGc -3'
miRNA:   3'- -GUGUGGU---------GCGGUCAUGUGA---------AGUA--GCC- -5'
23705 5' -51.4 NC_005261.1 + 28255 0.66 0.987915
Target:  5'- aCGCACCcCGCCG--ACG--UCAUCGGc -3'
miRNA:   3'- -GUGUGGuGCGGUcaUGUgaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 29231 0.67 0.982605
Target:  5'- aGCACCAgGCCgggcaGGUucuccgcuagcaGCGCcgCGUCGGg -3'
miRNA:   3'- gUGUGGUgCGG-----UCA------------UGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 29626 0.7 0.910834
Target:  5'- gCGCGCCGCGCCAcgGCAC--CAUgGGc -3'
miRNA:   3'- -GUGUGGUGCGGUcaUGUGaaGUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 29782 0.66 0.98454
Target:  5'- gGCACCAgCGCCucGGgcgGCACcgaGUCGGc -3'
miRNA:   3'- gUGUGGU-GCGG--UCa--UGUGaagUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 29976 0.66 0.989373
Target:  5'- -cCACCGCGCCugcGUGCACggcaaccgCGUCc- -3'
miRNA:   3'- guGUGGUGCGGu--CAUGUGaa------GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 30877 0.66 0.986307
Target:  5'- gCAgGCCGCGCCGaaggGCAgcgCGUCGGc -3'
miRNA:   3'- -GUgUGGUGCGGUca--UGUgaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 31352 0.67 0.982605
Target:  5'- gCGCGCCacGCGCCGcGUACACcgccagCAUCu- -3'
miRNA:   3'- -GUGUGG--UGCGGU-CAUGUGaa----GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 31414 0.69 0.947919
Target:  5'- gGCGCgCGCGCCGc-GCACcgCGUCGGc -3'
miRNA:   3'- gUGUG-GUGCGGUcaUGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 32460 0.67 0.975703
Target:  5'- cCACGCCGCGCCcuccgcgaGCGCgcCGUCGa -3'
miRNA:   3'- -GUGUGGUGCGGuca-----UGUGaaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 33542 0.66 0.989373
Target:  5'- gCGgACCGCGCgGGUcACGCacgCGUCGa -3'
miRNA:   3'- -GUgUGGUGCGgUCA-UGUGaa-GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 34232 0.72 0.836198
Target:  5'- -cCACCGCGCC-GUccgcgggcgccgcGCGCgggUCGUCGGg -3'
miRNA:   3'- guGUGGUGCGGuCA-------------UGUGa--AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 34358 0.66 0.989373
Target:  5'- gCGCGCCGCGCaggaAGUACuGCcgCAgcgccUCGGc -3'
miRNA:   3'- -GUGUGGUGCGg---UCAUG-UGaaGU-----AGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.