miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 137051 0.68 0.966986
Target:  5'- cCGCGCCGCGCC--UGCACcagCGUCu- -3'
miRNA:   3'- -GUGUGGUGCGGucAUGUGaa-GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 137004 0.7 0.916892
Target:  5'- cCAgGCCACGCCGGgcgcCGCggCcgCGGc -3'
miRNA:   3'- -GUgUGGUGCGGUCau--GUGaaGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 136891 0.67 0.982605
Target:  5'- -cCGCCGCgGCCGGca-GC-UCGUCGGg -3'
miRNA:   3'- guGUGGUG-CGGUCaugUGaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 135003 0.69 0.947919
Target:  5'- cCGCcaGCCGCGCCG--GCACUUCcgccggCGGg -3'
miRNA:   3'- -GUG--UGGUGCGGUcaUGUGAAGua----GCC- -5'
23705 5' -51.4 NC_005261.1 + 134641 0.68 0.966986
Target:  5'- gCGCACCGCGCCGccucuaGCGCcUCG-CGGc -3'
miRNA:   3'- -GUGUGGUGCGGUca----UGUGaAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 128012 0.72 0.819696
Target:  5'- gCGCGCUGCGCCGc-GCGCU-CGUCGGc -3'
miRNA:   3'- -GUGUGGUGCGGUcaUGUGAaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 125739 0.69 0.952211
Target:  5'- gGgGCCGCGCCGGcGCgACaUCGUCGu -3'
miRNA:   3'- gUgUGGUGCGGUCaUG-UGaAGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 124314 0.66 0.986307
Target:  5'- aGgGCCACGUCGGcgaaGCACUcgcggUCGUCGa -3'
miRNA:   3'- gUgUGGUGCGGUCa---UGUGA-----AGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 118969 0.71 0.897965
Target:  5'- cCGCGCCGaaguCGCCcaGGcACACgUCGUCGGg -3'
miRNA:   3'- -GUGUGGU----GCGG--UCaUGUGaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 117934 0.68 0.966986
Target:  5'- uGC-CCGCGCgGGUgugGCGCUUCcuugCGGa -3'
miRNA:   3'- gUGuGGUGCGgUCA---UGUGAAGua--GCC- -5'
23705 5' -51.4 NC_005261.1 + 116978 0.71 0.87683
Target:  5'- cCGCGCCGCGCCggccGGUGCAgUUCuUCc- -3'
miRNA:   3'- -GUGUGGUGCGG----UCAUGUgAAGuAGcc -5'
23705 5' -51.4 NC_005261.1 + 114775 0.66 0.99069
Target:  5'- -cCGCCGCuGCCGGgGCGCggCggggGUCGGg -3'
miRNA:   3'- guGUGGUG-CGGUCaUGUGaaG----UAGCC- -5'
23705 5' -51.4 NC_005261.1 + 110812 0.66 0.989373
Target:  5'- aGCACCGuCGCCGccgacuGUAC-CUUCGUUGc -3'
miRNA:   3'- gUGUGGU-GCGGU------CAUGuGAAGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 109634 0.66 0.99069
Target:  5'- gACGCCGCgGCCGGggGCGCcugggCcgCGGc -3'
miRNA:   3'- gUGUGGUG-CGGUCa-UGUGaa---GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 109073 0.75 0.692643
Target:  5'- gCGCGCCGcCGCCGcccggccgcGUGCGCUUCggCGGc -3'
miRNA:   3'- -GUGUGGU-GCGGU---------CAUGUGAAGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 106927 0.68 0.966006
Target:  5'- aGCGCCGgcggccugaguggcCGCCGGUGCGCgg---CGGg -3'
miRNA:   3'- gUGUGGU--------------GCGGUCAUGUGaaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 106447 0.66 0.989373
Target:  5'- -cCGCgGCGCCAacGUGCGCUaCA-CGGu -3'
miRNA:   3'- guGUGgUGCGGU--CAUGUGAaGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 104014 0.67 0.982605
Target:  5'- gGCGCCGCGCgCAG-ACGCggcgcaggagUUUAUCGa -3'
miRNA:   3'- gUGUGGUGCG-GUCaUGUG----------AAGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 99846 0.66 0.989373
Target:  5'- gGCACaGCGCCGGcGCGCggcCAUgCGGc -3'
miRNA:   3'- gUGUGgUGCGGUCaUGUGaa-GUA-GCC- -5'
23705 5' -51.4 NC_005261.1 + 99528 0.68 0.960068
Target:  5'- gCGCACgCugGCCaAGUACAC--CAUCGc -3'
miRNA:   3'- -GUGUG-GugCGG-UCAUGUGaaGUAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.