miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 99038 0.67 0.982605
Target:  5'- gCGCGCgGCGgCAGc-CGCcUCAUCGGc -3'
miRNA:   3'- -GUGUGgUGCgGUCauGUGaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 97247 0.8 0.437733
Target:  5'- gCGCGCCAgcCGCCGGUAgGCUUCGUCc- -3'
miRNA:   3'- -GUGUGGU--GCGGUCAUgUGAAGUAGcc -5'
23705 5' -51.4 NC_005261.1 + 96977 0.67 0.982402
Target:  5'- gCGCGCCACGaCgAGUcccuuggccgagcACACUUCGcagugCGGu -3'
miRNA:   3'- -GUGUGGUGC-GgUCA-------------UGUGAAGUa----GCC- -5'
23705 5' -51.4 NC_005261.1 + 90690 0.66 0.986307
Target:  5'- gGCGCCGCGUCG----GCggCGUCGGg -3'
miRNA:   3'- gUGUGGUGCGGUcaugUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 88210 0.67 0.980272
Target:  5'- gGCACCGCcgcagcaGCCGGUGCAgcagcgCGUCGa -3'
miRNA:   3'- gUGUGGUG-------CGGUCAUGUgaa---GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 88052 0.66 0.98454
Target:  5'- uGCACCAgcagcCGCCGGUaggccGCGCccgUCAUCa- -3'
miRNA:   3'- gUGUGGU-----GCGGUCA-----UGUGa--AGUAGcc -5'
23705 5' -51.4 NC_005261.1 + 87077 0.73 0.782891
Target:  5'- gCACGCCgGCGCCGccGCcgcCUUCGUCGGg -3'
miRNA:   3'- -GUGUGG-UGCGGUcaUGu--GAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 86512 0.66 0.987915
Target:  5'- aGCGCCGCGCggcagcagCGGcGCGCUaCAUCGc -3'
miRNA:   3'- gUGUGGUGCG--------GUCaUGUGAaGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 86162 0.71 0.87683
Target:  5'- gGCGCUGCgGCCGGUACGgUUUcgUGGg -3'
miRNA:   3'- gUGUGGUG-CGGUCAUGUgAAGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 85426 0.77 0.566598
Target:  5'- aGCGCCGCGCCGGUGCgGCgccggCAggCGGg -3'
miRNA:   3'- gUGUGGUGCGGUCAUG-UGaa---GUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 85376 0.67 0.980493
Target:  5'- gCGCAgCuCGCCA--GCGCUUCcgCGGc -3'
miRNA:   3'- -GUGUgGuGCGGUcaUGUGAAGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 85248 0.72 0.828467
Target:  5'- gUACGCgCGCGCCGucGCGCcgccgUCGUCGGg -3'
miRNA:   3'- -GUGUG-GUGCGGUcaUGUGa----AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 84835 0.67 0.980493
Target:  5'- cCGCGCCGCGgcCCAGgcGCACUagcggCcgCGGg -3'
miRNA:   3'- -GUGUGGUGC--GGUCa-UGUGAa----GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 84678 0.67 0.973009
Target:  5'- gCGCGCCGCgGCCAGcugcgGCGCgcccgCA-CGGg -3'
miRNA:   3'- -GUGUGGUG-CGGUCa----UGUGaa---GUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 84344 0.78 0.515359
Target:  5'- -gUACCGCGCgCGGUGCGCUUCGguagugCGGu -3'
miRNA:   3'- guGUGGUGCG-GUCAUGUGAAGUa-----GCC- -5'
23705 5' -51.4 NC_005261.1 + 80181 0.67 0.982605
Target:  5'- aGCGCgCGCGCCAGcaGCGCgcCcgCGGc -3'
miRNA:   3'- gUGUG-GUGCGGUCa-UGUGaaGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 80133 0.67 0.973009
Target:  5'- cCGCGCCGCGCC---GCGCUcgccgcgcUCA-CGGg -3'
miRNA:   3'- -GUGUGGUGCGGucaUGUGA--------AGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 79576 0.67 0.972729
Target:  5'- aCGCGCCGCGCCAcGUccuccaggcacccGCGCUggGUCu- -3'
miRNA:   3'- -GUGUGGUGCGGU-CA-------------UGUGAagUAGcc -5'
23705 5' -51.4 NC_005261.1 + 77691 0.66 0.98454
Target:  5'- aCACGCCGCGCguGgcgGCGCacgg-CGGu -3'
miRNA:   3'- -GUGUGGUGCGguCa--UGUGaaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 77276 0.69 0.947919
Target:  5'- gCGCGCUGCGCC-GUGCGCUgcuUCGc -3'
miRNA:   3'- -GUGUGGUGCGGuCAUGUGAaguAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.