miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 34616 0.66 0.986307
Target:  5'- aGCGCCAC-CCAGgcCGCgggccgUCuUCGGu -3'
miRNA:   3'- gUGUGGUGcGGUCauGUGa-----AGuAGCC- -5'
23705 5' -51.4 NC_005261.1 + 30877 0.66 0.986307
Target:  5'- gCAgGCCGCGCCGaaggGCAgcgCGUCGGc -3'
miRNA:   3'- -GUgUGGUGCGGUca--UGUgaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 18646 0.66 0.986307
Target:  5'- gCGCGCCcCGCCcauGUGCugUUUG-CGGc -3'
miRNA:   3'- -GUGUGGuGCGGu--CAUGugAAGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 124314 0.66 0.986307
Target:  5'- aGgGCCACGUCGGcgaaGCACUcgcggUCGUCGa -3'
miRNA:   3'- gUgUGGUGCGGUCa---UGUGA-----AGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 71683 0.66 0.986307
Target:  5'- cCGCGCUcagcgaGCGCCGGUugauGCGCUUCAcCa- -3'
miRNA:   3'- -GUGUGG------UGCGGUCA----UGUGAAGUaGcc -5'
23705 5' -51.4 NC_005261.1 + 35664 0.66 0.98562
Target:  5'- cCGCGCCcgcCGCCAGggcguucuucaggGCGCUUgCcgCGGa -3'
miRNA:   3'- -GUGUGGu--GCGGUCa------------UGUGAA-GuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 88052 0.66 0.98454
Target:  5'- uGCACCAgcagcCGCCGGUaggccGCGCccgUCAUCa- -3'
miRNA:   3'- gUGUGGU-----GCGGUCA-----UGUGa--AGUAGcc -5'
23705 5' -51.4 NC_005261.1 + 56234 0.66 0.98454
Target:  5'- uGC-CCGCGCCAGcaaGCGCggCG-CGGa -3'
miRNA:   3'- gUGuGGUGCGGUCa--UGUGaaGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 77691 0.66 0.98454
Target:  5'- aCACGCCGCGCguGgcgGCGCacgg-CGGu -3'
miRNA:   3'- -GUGUGGUGCGguCa--UGUGaaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 44069 0.66 0.98454
Target:  5'- gGCGCCagcccgaacucGCGCCGGUAgGCgucgaUCGUcCGGc -3'
miRNA:   3'- gUGUGG-----------UGCGGUCAUgUGa----AGUA-GCC- -5'
23705 5' -51.4 NC_005261.1 + 60836 0.66 0.98454
Target:  5'- gGCGCCGcCGCCAGUgGCGCcgCcgCGc -3'
miRNA:   3'- gUGUGGU-GCGGUCA-UGUGaaGuaGCc -5'
23705 5' -51.4 NC_005261.1 + 29782 0.66 0.98454
Target:  5'- gGCACCAgCGCCucGGgcgGCACcgaGUCGGc -3'
miRNA:   3'- gUGUGGU-GCGG--UCa--UGUGaagUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 31352 0.67 0.982605
Target:  5'- gCGCGCCacGCGCCGcGUACACcgccagCAUCu- -3'
miRNA:   3'- -GUGUGG--UGCGGU-CAUGUGaa----GUAGcc -5'
23705 5' -51.4 NC_005261.1 + 69517 0.67 0.982605
Target:  5'- gGCugUGCGCCGucGUGCGCUgcg-CGGa -3'
miRNA:   3'- gUGugGUGCGGU--CAUGUGAaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 80181 0.67 0.982605
Target:  5'- aGCGCgCGCGCCAGcaGCGCgcCcgCGGc -3'
miRNA:   3'- gUGUG-GUGCGGUCa-UGUGaaGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 104014 0.67 0.982605
Target:  5'- gGCGCCGCGCgCAG-ACGCggcgcaggagUUUAUCGa -3'
miRNA:   3'- gUGUGGUGCG-GUCaUGUG----------AAGUAGCc -5'
23705 5' -51.4 NC_005261.1 + 20144 0.67 0.982605
Target:  5'- cUACGCCGucugcggcgUGCCGGUGCACUgcgcgcacuUCGUgaCGGc -3'
miRNA:   3'- -GUGUGGU---------GCGGUCAUGUGA---------AGUA--GCC- -5'
23705 5' -51.4 NC_005261.1 + 58186 0.67 0.982605
Target:  5'- gUACAgCUugGCCAGcGCguuGCUgagCAUCGGc -3'
miRNA:   3'- -GUGU-GGugCGGUCaUG---UGAa--GUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 69325 0.67 0.982605
Target:  5'- uCGCGCUAUGCCAGUuccugcugucGCGCUggggCAU-GGc -3'
miRNA:   3'- -GUGUGGUGCGGUCA----------UGUGAa---GUAgCC- -5'
23705 5' -51.4 NC_005261.1 + 76014 0.67 0.982605
Target:  5'- gCGCGCCuGCGgCAGcgGCACcgUCGUgGGg -3'
miRNA:   3'- -GUGUGG-UGCgGUCa-UGUGa-AGUAgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.