Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23705 | 5' | -51.4 | NC_005261.1 | + | 97247 | 0.8 | 0.437733 |
Target: 5'- gCGCGCCAgcCGCCGGUAgGCUUCGUCc- -3' miRNA: 3'- -GUGUGGU--GCGGUCAUgUGAAGUAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 84344 | 0.78 | 0.515359 |
Target: 5'- -gUACCGCGCgCGGUGCGCUUCGguagugCGGu -3' miRNA: 3'- guGUGGUGCG-GUCAUGUGAAGUa-----GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 64853 | 0.77 | 0.597978 |
Target: 5'- aACAUCguGCGCCAGUACGC--CAUCGGc -3' miRNA: 3'- gUGUGG--UGCGGUCAUGUGaaGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 85426 | 0.77 | 0.566598 |
Target: 5'- aGCGCCGCGCCGGUGCgGCgccggCAggCGGg -3' miRNA: 3'- gUGUGGUGCGGUCAUG-UGaa---GUa-GCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 19413 | 0.75 | 0.692643 |
Target: 5'- gCACGCCGCGCU-GUGCuuCUgCGUCGGg -3' miRNA: 3'- -GUGUGGUGCGGuCAUGu-GAaGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 109073 | 0.75 | 0.692643 |
Target: 5'- gCGCGCCGcCGCCGcccggccgcGUGCGCUUCggCGGc -3' miRNA: 3'- -GUGUGGU-GCGGU---------CAUGUGAAGuaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 87077 | 0.73 | 0.782891 |
Target: 5'- gCACGCCgGCGCCGccGCcgcCUUCGUCGGg -3' miRNA: 3'- -GUGUGG-UGCGGUcaUGu--GAAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 61329 | 0.73 | 0.792332 |
Target: 5'- cCGCGCCugGCCGGUgccgcgcgagGCGCUggcgCGGa -3' miRNA: 3'- -GUGUGGugCGGUCA----------UGUGAaguaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 34232 | 0.72 | 0.836198 |
Target: 5'- -cCACCGCGCC-GUccgcgggcgccgcGCGCgggUCGUCGGg -3' miRNA: 3'- guGUGGUGCGGuCA-------------UGUGa--AGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 128012 | 0.72 | 0.819696 |
Target: 5'- gCGCGCUGCGCCGc-GCGCU-CGUCGGc -3' miRNA: 3'- -GUGUGGUGCGGUcaUGUGAaGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 63086 | 0.72 | 0.833639 |
Target: 5'- gCGCACCGCGCCAccGUcggcggcGCGCggagcccugugaccUUCGUCGGc -3' miRNA: 3'- -GUGUGGUGCGGU--CA-------UGUG--------------AAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 85248 | 0.72 | 0.828467 |
Target: 5'- gUACGCgCGCGCCGucGCGCcgccgUCGUCGGg -3' miRNA: 3'- -GUGUG-GUGCGGUcaUGUGa----AGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 118969 | 0.71 | 0.897965 |
Target: 5'- cCGCGCCGaaguCGCCcaGGcACACgUCGUCGGg -3' miRNA: 3'- -GUGUGGU----GCGG--UCaUGUGaAGUAGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 38741 | 0.71 | 0.89116 |
Target: 5'- gCACAUgCGCGCCAGcACGCUgacCGUCGu -3' miRNA: 3'- -GUGUG-GUGCGGUCaUGUGAa--GUAGCc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 11934 | 0.71 | 0.89116 |
Target: 5'- --aGCCGCGCCAGcGCGCUcgccUCG-CGGu -3' miRNA: 3'- gugUGGUGCGGUCaUGUGA----AGUaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 116978 | 0.71 | 0.87683 |
Target: 5'- cCGCGCCGCGCCggccGGUGCAgUUCuUCc- -3' miRNA: 3'- -GUGUGGUGCGG----UCAUGUgAAGuAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 86162 | 0.71 | 0.87683 |
Target: 5'- gGCGCUGCgGCCGGUACGgUUUcgUGGg -3' miRNA: 3'- gUGUGGUG-CGGUCAUGUgAAGuaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 46644 | 0.7 | 0.916892 |
Target: 5'- gGCGCuCACGCCGGcgGCGCaaagUCGUCa- -3' miRNA: 3'- gUGUG-GUGCGGUCa-UGUGa---AGUAGcc -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 137004 | 0.7 | 0.916892 |
Target: 5'- cCAgGCCACGCCGGgcgcCGCggCcgCGGc -3' miRNA: 3'- -GUgUGGUGCGGUCau--GUGaaGuaGCC- -5' |
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23705 | 5' | -51.4 | NC_005261.1 | + | 29626 | 0.7 | 0.910834 |
Target: 5'- gCGCGCCGCGCCAcgGCAC--CAUgGGc -3' miRNA: 3'- -GUGUGGUGCGGUcaUGUGaaGUAgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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