miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 5' -51.4 NC_005261.1 + 97247 0.8 0.437733
Target:  5'- gCGCGCCAgcCGCCGGUAgGCUUCGUCc- -3'
miRNA:   3'- -GUGUGGU--GCGGUCAUgUGAAGUAGcc -5'
23705 5' -51.4 NC_005261.1 + 84344 0.78 0.515359
Target:  5'- -gUACCGCGCgCGGUGCGCUUCGguagugCGGu -3'
miRNA:   3'- guGUGGUGCG-GUCAUGUGAAGUa-----GCC- -5'
23705 5' -51.4 NC_005261.1 + 64853 0.77 0.597978
Target:  5'- aACAUCguGCGCCAGUACGC--CAUCGGc -3'
miRNA:   3'- gUGUGG--UGCGGUCAUGUGaaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 85426 0.77 0.566598
Target:  5'- aGCGCCGCGCCGGUGCgGCgccggCAggCGGg -3'
miRNA:   3'- gUGUGGUGCGGUCAUG-UGaa---GUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 109073 0.75 0.692643
Target:  5'- gCGCGCCGcCGCCGcccggccgcGUGCGCUUCggCGGc -3'
miRNA:   3'- -GUGUGGU-GCGGU---------CAUGUGAAGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 19413 0.75 0.692643
Target:  5'- gCACGCCGCGCU-GUGCuuCUgCGUCGGg -3'
miRNA:   3'- -GUGUGGUGCGGuCAUGu-GAaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 87077 0.73 0.782891
Target:  5'- gCACGCCgGCGCCGccGCcgcCUUCGUCGGg -3'
miRNA:   3'- -GUGUGG-UGCGGUcaUGu--GAAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 61329 0.73 0.792332
Target:  5'- cCGCGCCugGCCGGUgccgcgcgagGCGCUggcgCGGa -3'
miRNA:   3'- -GUGUGGugCGGUCA----------UGUGAaguaGCC- -5'
23705 5' -51.4 NC_005261.1 + 128012 0.72 0.819696
Target:  5'- gCGCGCUGCGCCGc-GCGCU-CGUCGGc -3'
miRNA:   3'- -GUGUGGUGCGGUcaUGUGAaGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 34232 0.72 0.836198
Target:  5'- -cCACCGCGCC-GUccgcgggcgccgcGCGCgggUCGUCGGg -3'
miRNA:   3'- guGUGGUGCGGuCA-------------UGUGa--AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 63086 0.72 0.833639
Target:  5'- gCGCACCGCGCCAccGUcggcggcGCGCggagcccugugaccUUCGUCGGc -3'
miRNA:   3'- -GUGUGGUGCGGU--CA-------UGUG--------------AAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 85248 0.72 0.828467
Target:  5'- gUACGCgCGCGCCGucGCGCcgccgUCGUCGGg -3'
miRNA:   3'- -GUGUG-GUGCGGUcaUGUGa----AGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 86162 0.71 0.87683
Target:  5'- gGCGCUGCgGCCGGUACGgUUUcgUGGg -3'
miRNA:   3'- gUGUGGUG-CGGUCAUGUgAAGuaGCC- -5'
23705 5' -51.4 NC_005261.1 + 116978 0.71 0.87683
Target:  5'- cCGCGCCGCGCCggccGGUGCAgUUCuUCc- -3'
miRNA:   3'- -GUGUGGUGCGG----UCAUGUgAAGuAGcc -5'
23705 5' -51.4 NC_005261.1 + 38741 0.71 0.89116
Target:  5'- gCACAUgCGCGCCAGcACGCUgacCGUCGu -3'
miRNA:   3'- -GUGUG-GUGCGGUCaUGUGAa--GUAGCc -5'
23705 5' -51.4 NC_005261.1 + 118969 0.71 0.897965
Target:  5'- cCGCGCCGaaguCGCCcaGGcACACgUCGUCGGg -3'
miRNA:   3'- -GUGUGGU----GCGG--UCaUGUGaAGUAGCC- -5'
23705 5' -51.4 NC_005261.1 + 11934 0.71 0.89116
Target:  5'- --aGCCGCGCCAGcGCGCUcgccUCG-CGGu -3'
miRNA:   3'- gugUGGUGCGGUCaUGUGA----AGUaGCC- -5'
23705 5' -51.4 NC_005261.1 + 67008 0.7 0.922697
Target:  5'- cCGCGCCGCGacCCGGUACGCguggUAggCGGc -3'
miRNA:   3'- -GUGUGGUGC--GGUCAUGUGaa--GUa-GCC- -5'
23705 5' -51.4 NC_005261.1 + 46644 0.7 0.916892
Target:  5'- gGCGCuCACGCCGGcgGCGCaaagUCGUCa- -3'
miRNA:   3'- gUGUG-GUGCGGUCa-UGUGa---AGUAGcc -5'
23705 5' -51.4 NC_005261.1 + 137004 0.7 0.916892
Target:  5'- cCAgGCCACGCCGGgcgcCGCggCcgCGGc -3'
miRNA:   3'- -GUgUGGUGCGGUCau--GUGaaGuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.