miRNA display CGI


Results 21 - 40 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 3' -57.2 NC_005261.1 + 15817 0.67 0.769543
Target:  5'- --gCGCUGCGC-AGCUCC--GCCGCa -3'
miRNA:   3'- ugaGCGACGUGcUCGAGGagUGGUGg -5'
23706 3' -57.2 NC_005261.1 + 16428 0.74 0.390961
Target:  5'- aGCUCGCcgUGC-CGcGCUCCagCGCCGCCc -3'
miRNA:   3'- -UGAGCG--ACGuGCuCGAGGa-GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 16482 0.68 0.760072
Target:  5'- aGCUCGuCUGCGCG----CCgugCGCCGCCa -3'
miRNA:   3'- -UGAGC-GACGUGCucgaGGa--GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 16867 0.68 0.731017
Target:  5'- -gUCGaUG-GCGAGCUCCUCgucgcugucggaGCCGCCg -3'
miRNA:   3'- ugAGCgACgUGCUCGAGGAG------------UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 16930 0.68 0.731017
Target:  5'- -gUCGaUG-GCGAGCUCCUCggcguaccggcuGCCGCCa -3'
miRNA:   3'- ugAGCgACgUGCUCGAGGAG------------UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 17877 0.71 0.568859
Target:  5'- cGC-CGCUGCcCGAGUUCUcCGCgACCg -3'
miRNA:   3'- -UGaGCGACGuGCUCGAGGaGUGgUGG- -5'
23706 3' -57.2 NC_005261.1 + 18031 0.66 0.848221
Target:  5'- cGCUggaCGgUGCGCGAcggcgccgcGC-CCUCGCgCACCg -3'
miRNA:   3'- -UGA---GCgACGUGCU---------CGaGGAGUG-GUGG- -5'
23706 3' -57.2 NC_005261.1 + 18062 0.66 0.848221
Target:  5'- gGCgCGCUGCGucccCGAGCgcgUCUC-CCugCg -3'
miRNA:   3'- -UGaGCGACGU----GCUCGa--GGAGuGGugG- -5'
23706 3' -57.2 NC_005261.1 + 18776 0.67 0.806112
Target:  5'- aGC-CGCUGUACGugcacugcGGCguggCCgacaaCGCCACCg -3'
miRNA:   3'- -UGaGCGACGUGC--------UCGa---GGa----GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 19115 0.67 0.778891
Target:  5'- uGCUCGCUGgGCGGGgg-CUCGCCGa- -3'
miRNA:   3'- -UGAGCGACgUGCUCgagGAGUGGUgg -5'
23706 3' -57.2 NC_005261.1 + 19785 0.67 0.778891
Target:  5'- aGCUCGCgcugucgGC-CGuuGC-CCUgGCCGCCg -3'
miRNA:   3'- -UGAGCGa------CGuGCu-CGaGGAgUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 20304 0.69 0.69213
Target:  5'- cGCUCGuCUGCugGcGGC-CCgccgcgcagacgcugCGCCGCCg -3'
miRNA:   3'- -UGAGC-GACGugC-UCGaGGa--------------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 20439 0.82 0.1255
Target:  5'- cGCUCGCUGCuACGGGCgCgCUCGCUGCCa -3'
miRNA:   3'- -UGAGCGACG-UGCUCGaG-GAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 21510 0.67 0.769543
Target:  5'- cGCcCGCgaggacGCGCGGGCcgucuUCCUCGCCAa- -3'
miRNA:   3'- -UGaGCGa-----CGUGCUCG-----AGGAGUGGUgg -5'
23706 3' -57.2 NC_005261.1 + 21720 0.66 0.848221
Target:  5'- uGCUcCGCgGCgccggcccaaucGCGAGCgCCUCGCuCAUCg -3'
miRNA:   3'- -UGA-GCGaCG------------UGCUCGaGGAGUG-GUGG- -5'
23706 3' -57.2 NC_005261.1 + 22044 0.66 0.831915
Target:  5'- -aUCGCcccGUGCGGGUUCgUCcguGCCGCCg -3'
miRNA:   3'- ugAGCGa--CGUGCUCGAGgAG---UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 22899 0.66 0.840163
Target:  5'- gGC-CGCggcgGCGCGccgcAGCcCCcgCACCACCu -3'
miRNA:   3'- -UGaGCGa---CGUGC----UCGaGGa-GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 22961 0.69 0.670841
Target:  5'- gGC-CGCgGCcCGAGCUCgcgCUCGCgGCCg -3'
miRNA:   3'- -UGaGCGaCGuGCUCGAG---GAGUGgUGG- -5'
23706 3' -57.2 NC_005261.1 + 25091 0.66 0.848221
Target:  5'- uCUCGCUGcCGCGGGCcugggCCcggCugCGCg -3'
miRNA:   3'- uGAGCGAC-GUGCUCGa----GGa--GugGUGg -5'
23706 3' -57.2 NC_005261.1 + 25572 0.68 0.731017
Target:  5'- gACgCGCUG-ACGGGCUCCaaccUCugCACg -3'
miRNA:   3'- -UGaGCGACgUGCUCGAGG----AGugGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.