miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 3' -57.2 NC_005261.1 + 1916 0.7 0.599307
Target:  5'- gACUCGCgcgcggGCagcaGCGAGCagCUCGgCGCCg -3'
miRNA:   3'- -UGAGCGa-----CG----UGCUCGagGAGUgGUGG- -5'
23706 3' -57.2 NC_005261.1 + 2707 0.75 0.350448
Target:  5'- aGCUCuGCgccGCGCGgcGGCUaagCCUCGCCACCu -3'
miRNA:   3'- -UGAG-CGa--CGUGC--UCGA---GGAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 3893 0.68 0.750488
Target:  5'- cGCU-GCUGCacuACGAGCacagCCUgCGCCugCa -3'
miRNA:   3'- -UGAgCGACG---UGCUCGa---GGA-GUGGugG- -5'
23706 3' -57.2 NC_005261.1 + 3953 0.67 0.778891
Target:  5'- uGCUCGCggggcUGCugGugaaGGCgcucuaCCUgGCCGCCa -3'
miRNA:   3'- -UGAGCG-----ACGugC----UCGa-----GGAgUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 4058 0.69 0.69112
Target:  5'- uCUCGCUGCuguacCGcaAGCcCCcgCGCCGCCg -3'
miRNA:   3'- uGAGCGACGu----GC--UCGaGGa-GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 4319 0.71 0.548771
Target:  5'- aGCUCGCgcggcucaUGUGCGAGCUCUcgGCgCGCCg -3'
miRNA:   3'- -UGAGCG--------ACGUGCUCGAGGagUG-GUGG- -5'
23706 3' -57.2 NC_005261.1 + 4744 0.75 0.36629
Target:  5'- cGC-CGCUGCGCGAGCgcugcgugCUCGCCuCCg -3'
miRNA:   3'- -UGaGCGACGUGCUCGag------GAGUGGuGG- -5'
23706 3' -57.2 NC_005261.1 + 5076 0.69 0.66065
Target:  5'- gACUgGCUGCucGCGcAGCUCCU-GCCGgCa -3'
miRNA:   3'- -UGAgCGACG--UGC-UCGAGGAgUGGUgG- -5'
23706 3' -57.2 NC_005261.1 + 5375 0.66 0.814012
Target:  5'- --aCGCUGCgccacccGCGGGCg---CGCCACCg -3'
miRNA:   3'- ugaGCGACG-------UGCUCGaggaGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 6010 0.69 0.670841
Target:  5'- cGCUCGCgGCGCu-GUUCCccgaggcCGCCGCCg -3'
miRNA:   3'- -UGAGCGaCGUGcuCGAGGa------GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 6939 0.67 0.797185
Target:  5'- cGC-CGCgccuCGCGGGCgCCUC-CCGCCu -3'
miRNA:   3'- -UGaGCGac--GUGCUCGaGGAGuGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 7700 0.7 0.589124
Target:  5'- cGCgcgUGCUGCuCGAGCaCCUCGCCGa- -3'
miRNA:   3'- -UGa--GCGACGuGCUCGaGGAGUGGUgg -5'
23706 3' -57.2 NC_005261.1 + 7739 0.68 0.760072
Target:  5'- cGCUCGCcGaCGCGcuGCUCCUCGgCgaGCCc -3'
miRNA:   3'- -UGAGCGaC-GUGCu-CGAGGAGUgG--UGG- -5'
23706 3' -57.2 NC_005261.1 + 8037 0.69 0.670841
Target:  5'- gACgCGCUGCGgGucCUCUaCGCCACCg -3'
miRNA:   3'- -UGaGCGACGUgCucGAGGaGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 11110 0.66 0.840163
Target:  5'- cGCcCGCcGCGgGGGCagcCCUCcCCGCCg -3'
miRNA:   3'- -UGaGCGaCGUgCUCGa--GGAGuGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 12256 0.67 0.805226
Target:  5'- cGCUCGCgGCaagcuucccgaaaACGgcGGCUCCU--CCACCa -3'
miRNA:   3'- -UGAGCGaCG-------------UGC--UCGAGGAguGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 13511 0.7 0.599307
Target:  5'- -gUCGUcugGCcCGGGUUCCUgGCCGCCc -3'
miRNA:   3'- ugAGCGa--CGuGCUCGAGGAgUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 14865 0.72 0.528911
Target:  5'- cGCUagcaaGCUguaccGCGCGAGCgugcCCUCGCgCACCg -3'
miRNA:   3'- -UGAg----CGA-----CGUGCUCGa---GGAGUG-GUGG- -5'
23706 3' -57.2 NC_005261.1 + 15151 0.66 0.840163
Target:  5'- gGC-CGCccagGCGCGGGCcCCgccCAUCGCCc -3'
miRNA:   3'- -UGaGCGa---CGUGCUCGaGGa--GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 15706 0.7 0.609514
Target:  5'- -gUCaGCUGCGCcuGCUCCaUCGCCGCg -3'
miRNA:   3'- ugAG-CGACGUGcuCGAGG-AGUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.