miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23706 3' -57.2 NC_005261.1 + 110210 0.86 0.078056
Target:  5'- uCUCGCUGCGCGccgaagccGGCggCCUCGCCGCCg -3'
miRNA:   3'- uGAGCGACGUGC--------UCGa-GGAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 20439 0.82 0.1255
Target:  5'- cGCUCGCUGCuACGGGCgCgCUCGCUGCCa -3'
miRNA:   3'- -UGAGCGACG-UGCUCGaG-GAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 79286 0.82 0.13565
Target:  5'- cGCUCGCaggcgcGCGCGAGCUCCccgGCCACCg -3'
miRNA:   3'- -UGAGCGa-----CGUGCUCGAGGag-UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 69835 0.81 0.14283
Target:  5'- --cUGCUGCGCGGGCUCUuugagcgcgUCGCCGCCg -3'
miRNA:   3'- ugaGCGACGUGCUCGAGG---------AGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 85825 0.8 0.188851
Target:  5'- gACUCGC-GCGCGAGCUCgCcgUCgACCACCa -3'
miRNA:   3'- -UGAGCGaCGUGCUCGAG-G--AG-UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 106141 0.77 0.272187
Target:  5'- gGCcgCGCUGCugGAGCcgcacgCCgaggCGCCGCCg -3'
miRNA:   3'- -UGa-GCGACGugCUCGa-----GGa---GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 134495 0.76 0.305895
Target:  5'- gGCgagCGCgGCGCGGGCgCCcgCGCCGCCg -3'
miRNA:   3'- -UGa--GCGaCGUGCUCGaGGa-GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 67484 0.76 0.326129
Target:  5'- cACUUGCgcgccacgucccGCGCGAGCUCCagCGCCugCg -3'
miRNA:   3'- -UGAGCGa-----------CGUGCUCGAGGa-GUGGugG- -5'
23706 3' -57.2 NC_005261.1 + 2707 0.75 0.350448
Target:  5'- aGCUCuGCgccGCGCGgcGGCUaagCCUCGCCACCu -3'
miRNA:   3'- -UGAG-CGa--CGUGC--UCGA---GGAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 4744 0.75 0.36629
Target:  5'- cGC-CGCUGCGCGAGCgcugcgugCUCGCCuCCg -3'
miRNA:   3'- -UGaGCGACGUGCUCGag------GAGUGGuGG- -5'
23706 3' -57.2 NC_005261.1 + 36010 0.74 0.374393
Target:  5'- cGCUCcaGCgcgGCGCGcAGCUCCUCG-CGCCa -3'
miRNA:   3'- -UGAG--CGa--CGUGC-UCGAGGAGUgGUGG- -5'
23706 3' -57.2 NC_005261.1 + 82595 0.74 0.374393
Target:  5'- -gUCGCgGCGCGcGGC-CUUCGCCGCCg -3'
miRNA:   3'- ugAGCGaCGUGC-UCGaGGAGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 77161 0.74 0.390961
Target:  5'- cGCUCgGCguucgGCGCGAGCUCgaCUCgcugGCCGCCu -3'
miRNA:   3'- -UGAG-CGa----CGUGCUCGAG--GAG----UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 66511 0.74 0.390961
Target:  5'- cGCcCGCgcggGCACGAaaaaguGCUCCgCGCCGCCg -3'
miRNA:   3'- -UGaGCGa---CGUGCU------CGAGGaGUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 16428 0.74 0.390961
Target:  5'- aGCUCGCcgUGC-CGcGCUCCagCGCCGCCc -3'
miRNA:   3'- -UGAGCG--ACGuGCuCGAGGa-GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 136877 0.74 0.416693
Target:  5'- aGCUCGUcggGCGCcAGCUCCagcgcgCGCCGCCc -3'
miRNA:   3'- -UGAGCGa--CGUGcUCGAGGa-----GUGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 70215 0.73 0.425497
Target:  5'- aGCUCGCgcgcGcCGCGGGCccCCUCGCCcCCg -3'
miRNA:   3'- -UGAGCGa---C-GUGCUCGa-GGAGUGGuGG- -5'
23706 3' -57.2 NC_005261.1 + 35968 0.73 0.425497
Target:  5'- uGC-CGCUGCGCGGccGcCUCCUCggcgcGCCGCCc -3'
miRNA:   3'- -UGaGCGACGUGCU--C-GAGGAG-----UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 116609 0.72 0.480532
Target:  5'- cGC-CGCgGCGCGGGCcgCCgcaGCCGCCg -3'
miRNA:   3'- -UGaGCGaCGUGCUCGa-GGag-UGGUGG- -5'
23706 3' -57.2 NC_005261.1 + 35796 0.72 0.480532
Target:  5'- cCUCGCccGCGCcuuccGCgUCCUCGCCGCCa -3'
miRNA:   3'- uGAGCGa-CGUGcu---CG-AGGAGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.