Results 41 - 60 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 54820 | 0.66 | 0.941719 |
Target: 5'- gGCGugccCGCGGCGcccGCGGCcGCCAGc -3' miRNA: 3'- gUGCuu--GCGCUGCa--UGUCGuCGGUCc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 22768 | 0.66 | 0.941719 |
Target: 5'- gCACGu-CGCGGCaGcGCAGC-GUCGGGg -3' miRNA: 3'- -GUGCuuGCGCUG-CaUGUCGuCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 107608 | 0.66 | 0.941719 |
Target: 5'- -cCGGcCGCGGCgGUGgAGguGCUGGGg -3' miRNA: 3'- guGCUuGCGCUG-CAUgUCguCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 1930 | 0.66 | 0.941253 |
Target: 5'- aCGCGGcagccccagacucGCGCG-CGgGCAGCAGCgAGc -3' miRNA: 3'- -GUGCU-------------UGCGCuGCaUGUCGUCGgUCc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 41320 | 0.66 | 0.936943 |
Target: 5'- gCACGAucCGCGuCGgaggcgcCGGCugGGCCGGGg -3' miRNA: 3'- -GUGCUu-GCGCuGCau-----GUCG--UCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 115803 | 0.66 | 0.936943 |
Target: 5'- gGCGGAgGCGGCGcAC-GCuGCCGGc -3' miRNA: 3'- gUGCUUgCGCUGCaUGuCGuCGGUCc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 62544 | 0.66 | 0.936943 |
Target: 5'- gGgGcGCGCGGCGccgACGGCGGCCc-- -3' miRNA: 3'- gUgCuUGCGCUGCa--UGUCGUCGGucc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 41956 | 0.66 | 0.936943 |
Target: 5'- uGCGu-UGCGACGuuuaUugAGCGGCgGGGu -3' miRNA: 3'- gUGCuuGCGCUGC----AugUCGUCGgUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 28206 | 0.66 | 0.936943 |
Target: 5'- gGCGGcaguucCGCGACGUugAGgaGGCCuGGc -3' miRNA: 3'- gUGCUu-----GCGCUGCAugUCg-UCGGuCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 16319 | 0.66 | 0.936943 |
Target: 5'- gUACGGGuCGCGcACGcccGCGcGCAGCCAGc -3' miRNA: 3'- -GUGCUU-GCGC-UGCa--UGU-CGUCGGUCc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 87919 | 0.66 | 0.936943 |
Target: 5'- cCACGAggACGCucGCGUccGCGGCGGCCc-- -3' miRNA: 3'- -GUGCU--UGCGc-UGCA--UGUCGUCGGucc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 65797 | 0.66 | 0.936943 |
Target: 5'- gGCGAucgGCGCGcaaAUGUACcgGGCGGgCGGGc -3' miRNA: 3'- gUGCU---UGCGC---UGCAUG--UCGUCgGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 55262 | 0.66 | 0.936943 |
Target: 5'- cCGCGcGCGCGGCacgcccUGCAGguGCggCAGGu -3' miRNA: 3'- -GUGCuUGCGCUGc-----AUGUCguCG--GUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 44718 | 0.66 | 0.936943 |
Target: 5'- cCGCGGGCgGCGGCGccgGCGGgGcGCCGGcGg -3' miRNA: 3'- -GUGCUUG-CGCUGCa--UGUCgU-CGGUC-C- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 29647 | 0.66 | 0.936943 |
Target: 5'- gGCGGcgcCGCGGCGUccGCGGCGcGCCGc- -3' miRNA: 3'- gUGCUu--GCGCUGCA--UGUCGU-CGGUcc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 90694 | 0.66 | 0.936943 |
Target: 5'- cCGCGG-CGCcGCGU-CGGCGGCguCGGGg -3' miRNA: 3'- -GUGCUuGCGcUGCAuGUCGUCG--GUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 29366 | 0.66 | 0.936452 |
Target: 5'- -cCGAACGcCGcCGUggcgcgcagccgcGCGGCcGCCAGGu -3' miRNA: 3'- guGCUUGC-GCuGCA-------------UGUCGuCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 9913 | 0.66 | 0.936452 |
Target: 5'- aGCGAGCGCGAcauccuCGUcguggagcucgacGCGGCGGCgGaGGc -3' miRNA: 3'- gUGCUUGCGCU------GCA-------------UGUCGUCGgU-CC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 104803 | 0.67 | 0.931925 |
Target: 5'- cCGCGAgcaccaggggcgGCGcCGGCGcggGCGGCGGggcCCGGGg -3' miRNA: 3'- -GUGCU------------UGC-GCUGCa--UGUCGUC---GGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 283 | 0.67 | 0.931925 |
Target: 5'- cCACGGAcCGgGACGgggACGGgGGCCGc- -3' miRNA: 3'- -GUGCUU-GCgCUGCa--UGUCgUCGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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