miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 54820 0.66 0.941719
Target:  5'- gGCGugccCGCGGCGcccGCGGCcGCCAGc -3'
miRNA:   3'- gUGCuu--GCGCUGCa--UGUCGuCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 22768 0.66 0.941719
Target:  5'- gCACGu-CGCGGCaGcGCAGC-GUCGGGg -3'
miRNA:   3'- -GUGCuuGCGCUG-CaUGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 107608 0.66 0.941719
Target:  5'- -cCGGcCGCGGCgGUGgAGguGCUGGGg -3'
miRNA:   3'- guGCUuGCGCUG-CAUgUCguCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 1930 0.66 0.941253
Target:  5'- aCGCGGcagccccagacucGCGCG-CGgGCAGCAGCgAGc -3'
miRNA:   3'- -GUGCU-------------UGCGCuGCaUGUCGUCGgUCc -5'
23707 5' -54.3 NC_005261.1 + 41320 0.66 0.936943
Target:  5'- gCACGAucCGCGuCGgaggcgcCGGCugGGCCGGGg -3'
miRNA:   3'- -GUGCUu-GCGCuGCau-----GUCG--UCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 115803 0.66 0.936943
Target:  5'- gGCGGAgGCGGCGcAC-GCuGCCGGc -3'
miRNA:   3'- gUGCUUgCGCUGCaUGuCGuCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 62544 0.66 0.936943
Target:  5'- gGgGcGCGCGGCGccgACGGCGGCCc-- -3'
miRNA:   3'- gUgCuUGCGCUGCa--UGUCGUCGGucc -5'
23707 5' -54.3 NC_005261.1 + 41956 0.66 0.936943
Target:  5'- uGCGu-UGCGACGuuuaUugAGCGGCgGGGu -3'
miRNA:   3'- gUGCuuGCGCUGC----AugUCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 28206 0.66 0.936943
Target:  5'- gGCGGcaguucCGCGACGUugAGgaGGCCuGGc -3'
miRNA:   3'- gUGCUu-----GCGCUGCAugUCg-UCGGuCC- -5'
23707 5' -54.3 NC_005261.1 + 16319 0.66 0.936943
Target:  5'- gUACGGGuCGCGcACGcccGCGcGCAGCCAGc -3'
miRNA:   3'- -GUGCUU-GCGC-UGCa--UGU-CGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 87919 0.66 0.936943
Target:  5'- cCACGAggACGCucGCGUccGCGGCGGCCc-- -3'
miRNA:   3'- -GUGCU--UGCGc-UGCA--UGUCGUCGGucc -5'
23707 5' -54.3 NC_005261.1 + 65797 0.66 0.936943
Target:  5'- gGCGAucgGCGCGcaaAUGUACcgGGCGGgCGGGc -3'
miRNA:   3'- gUGCU---UGCGC---UGCAUG--UCGUCgGUCC- -5'
23707 5' -54.3 NC_005261.1 + 55262 0.66 0.936943
Target:  5'- cCGCGcGCGCGGCacgcccUGCAGguGCggCAGGu -3'
miRNA:   3'- -GUGCuUGCGCUGc-----AUGUCguCG--GUCC- -5'
23707 5' -54.3 NC_005261.1 + 44718 0.66 0.936943
Target:  5'- cCGCGGGCgGCGGCGccgGCGGgGcGCCGGcGg -3'
miRNA:   3'- -GUGCUUG-CGCUGCa--UGUCgU-CGGUC-C- -5'
23707 5' -54.3 NC_005261.1 + 29647 0.66 0.936943
Target:  5'- gGCGGcgcCGCGGCGUccGCGGCGcGCCGc- -3'
miRNA:   3'- gUGCUu--GCGCUGCA--UGUCGU-CGGUcc -5'
23707 5' -54.3 NC_005261.1 + 90694 0.66 0.936943
Target:  5'- cCGCGG-CGCcGCGU-CGGCGGCguCGGGg -3'
miRNA:   3'- -GUGCUuGCGcUGCAuGUCGUCG--GUCC- -5'
23707 5' -54.3 NC_005261.1 + 29366 0.66 0.936452
Target:  5'- -cCGAACGcCGcCGUggcgcgcagccgcGCGGCcGCCAGGu -3'
miRNA:   3'- guGCUUGC-GCuGCA-------------UGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 9913 0.66 0.936452
Target:  5'- aGCGAGCGCGAcauccuCGUcguggagcucgacGCGGCGGCgGaGGc -3'
miRNA:   3'- gUGCUUGCGCU------GCA-------------UGUCGUCGgU-CC- -5'
23707 5' -54.3 NC_005261.1 + 104803 0.67 0.931925
Target:  5'- cCGCGAgcaccaggggcgGCGcCGGCGcggGCGGCGGggcCCGGGg -3'
miRNA:   3'- -GUGCU------------UGC-GCUGCa--UGUCGUC---GGUCC- -5'
23707 5' -54.3 NC_005261.1 + 283 0.67 0.931925
Target:  5'- cCACGGAcCGgGACGgggACGGgGGCCGc- -3'
miRNA:   3'- -GUGCUU-GCgCUGCa--UGUCgUCGGUcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.