miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 38784 0.66 0.950551
Target:  5'- cCGCGAGCGU--CGUccACAGCGccGCCAGc -3'
miRNA:   3'- -GUGCUUGCGcuGCA--UGUCGU--CGGUCc -5'
23707 5' -54.3 NC_005261.1 + 28723 0.66 0.950551
Target:  5'- -cCGAGCGCGG-GUGCugAGCGGaCgAGGg -3'
miRNA:   3'- guGCUUGCGCUgCAUG--UCGUC-GgUCC- -5'
23707 5' -54.3 NC_005261.1 + 1325 0.66 0.950551
Target:  5'- gCGCGGAgGCG-CGggcacccAUGGCGGCgCAGGa -3'
miRNA:   3'- -GUGCUUgCGCuGCa------UGUCGUCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 134554 0.66 0.950551
Target:  5'- -cCGGGCGCuGGCG-GCAGCGGCgCcGGc -3'
miRNA:   3'- guGCUUGCG-CUGCaUGUCGUCG-GuCC- -5'
23707 5' -54.3 NC_005261.1 + 23770 0.66 0.949287
Target:  5'- gCGCGAguuuauuuggucacGCGCGcCGcGCGGCAGUCAu- -3'
miRNA:   3'- -GUGCU--------------UGCGCuGCaUGUCGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 115368 0.66 0.949287
Target:  5'- cCGCGAACGCcuuugccgggagggGACG-GCGGCAGCa--- -3'
miRNA:   3'- -GUGCUUGCG--------------CUGCaUGUCGUCGgucc -5'
23707 5' -54.3 NC_005261.1 + 40645 0.66 0.946255
Target:  5'- gCAgGGGCGgGGCGggcucgGCGGCgcGGCCGGc -3'
miRNA:   3'- -GUgCUUGCgCUGCa-----UGUCG--UCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 34647 0.66 0.946255
Target:  5'- gGCGGcgcccuccgccuGCGCcuCGUGCAGCAGCgccaccCAGGc -3'
miRNA:   3'- gUGCU------------UGCGcuGCAUGUCGUCG------GUCC- -5'
23707 5' -54.3 NC_005261.1 + 138105 0.66 0.946255
Target:  5'- gGCGGcUGCGGCGgcggcugcgGCGGCGGCUGcGGc -3'
miRNA:   3'- gUGCUuGCGCUGCa--------UGUCGUCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 137761 0.66 0.946255
Target:  5'- aGgGGAUGUGGCG-GCGGCcGCCAGc -3'
miRNA:   3'- gUgCUUGCGCUGCaUGUCGuCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 114405 0.66 0.946255
Target:  5'- gGCGGGCuagucGCGGCGgagcGCuGCuGCUAGGg -3'
miRNA:   3'- gUGCUUG-----CGCUGCa---UGuCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 66919 0.66 0.946255
Target:  5'- uCAgGAAgGCcuccCGgugcGCGGCGGCCAGGu -3'
miRNA:   3'- -GUgCUUgCGcu--GCa---UGUCGUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 422 0.66 0.946255
Target:  5'- gGCGGcUGCGGCGgcggcugcgGCGGCGGCUGcGGc -3'
miRNA:   3'- gUGCUuGCGCUGCa--------UGUCGUCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 81707 0.66 0.946255
Target:  5'- gAUGcACGCGACGUACuuuguGGCGGCgacgcugcuaAGGg -3'
miRNA:   3'- gUGCuUGCGCUGCAUG-----UCGUCGg---------UCC- -5'
23707 5' -54.3 NC_005261.1 + 58501 0.66 0.946255
Target:  5'- cCACaGGGCGCGcuccuUGUuuuGCAGCAGgcaCCAGGa -3'
miRNA:   3'- -GUG-CUUGCGCu----GCA---UGUCGUC---GGUCC- -5'
23707 5' -54.3 NC_005261.1 + 52185 0.66 0.946255
Target:  5'- cCGCGucGGCGCGcCGaACcggGGCAGCCGGu -3'
miRNA:   3'- -GUGC--UUGCGCuGCaUG---UCGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 36915 0.66 0.944919
Target:  5'- gGCGGcgGCGUGAUGcGCAGCagguucuugagguuGGCCAGc -3'
miRNA:   3'- gUGCU--UGCGCUGCaUGUCG--------------UCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 22768 0.66 0.941719
Target:  5'- gCACGu-CGCGGCaGcGCAGC-GUCGGGg -3'
miRNA:   3'- -GUGCuuGCGCUG-CaUGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 54820 0.66 0.941719
Target:  5'- gGCGugccCGCGGCGcccGCGGCcGCCAGc -3'
miRNA:   3'- gUGCuu--GCGCUGCa--UGUCGuCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 75820 0.66 0.941719
Target:  5'- uGCGccccGGCGCcACGcGCAGCaccacGGCCGGGa -3'
miRNA:   3'- gUGC----UUGCGcUGCaUGUCG-----UCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.