Results 21 - 40 of 325 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 6787 | 0.68 | 0.868513 |
Target: 5'- gCGCGcGCGCGcACGUACGcGC-GCCuGGc -3' miRNA: 3'- -GUGCuUGCGC-UGCAUGU-CGuCGGuCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 7919 | 0.77 | 0.418168 |
Target: 5'- aGCGGcuCGCGGCGUGCcucGGCGGCgAGGg -3' miRNA: 3'- gUGCUu-GCGCUGCAUG---UCGUCGgUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 8456 | 0.69 | 0.852302 |
Target: 5'- cCACG-GCGCccaccgaGugGUACaucugcagcagGGCGGCCAGGc -3' miRNA: 3'- -GUGCuUGCG-------CugCAUG-----------UCGUCGGUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 8744 | 0.78 | 0.392126 |
Target: 5'- aACGGugGCGGCG-GCGGCGGCaGGGg -3' miRNA: 3'- gUGCUugCGCUGCaUGUCGUCGgUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 9913 | 0.66 | 0.936452 |
Target: 5'- aGCGAGCGCGAcauccuCGUcguggagcucgacGCGGCGGCgGaGGc -3' miRNA: 3'- gUGCUUGCGCU------GCA-------------UGUCGUCGgU-CC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 10545 | 0.79 | 0.313288 |
Target: 5'- aGCGGACGgGGCGgucGCGGC-GCCAGGg -3' miRNA: 3'- gUGCUUGCgCUGCa--UGUCGuCGGUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 10625 | 0.68 | 0.892714 |
Target: 5'- gGCGGGCGCGAagacgcccggcugcuCGaGCGGCGgGCCGGc -3' miRNA: 3'- gUGCUUGCGCU---------------GCaUGUCGU-CGGUCc -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 10719 | 0.68 | 0.896709 |
Target: 5'- --gGGGCGgGACG-GCGGCGGCCGc- -3' miRNA: 3'- gugCUUGCgCUGCaUGUCGUCGGUcc -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 10759 | 0.83 | 0.188048 |
Target: 5'- -cCGGACGCGACGgcgGCGGC-GCCGGGg -3' miRNA: 3'- guGCUUGCGCUGCa--UGUCGuCGGUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 11436 | 0.67 | 0.931925 |
Target: 5'- -cCGGGCGCGGgG-GCGGCAGCgcgaaccgcgCGGGg -3' miRNA: 3'- guGCUUGCGCUgCaUGUCGUCG----------GUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 13008 | 0.67 | 0.903181 |
Target: 5'- gCugGAACGgGuGCGUGCgguacguuccggAGCGGCgCGGGc -3' miRNA: 3'- -GugCUUGCgC-UGCAUG------------UCGUCG-GUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 13079 | 0.7 | 0.811104 |
Target: 5'- cCGCGGGCGCuccgcggccucGGCGUccGCAGC-GCgCAGGg -3' miRNA: 3'- -GUGCUUGCG-----------CUGCA--UGUCGuCG-GUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 14420 | 0.69 | 0.845076 |
Target: 5'- cCGCGAGCGCuACaaACAGC-GUCAGGu -3' miRNA: 3'- -GUGCUUGCGcUGcaUGUCGuCGGUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 15369 | 0.67 | 0.931925 |
Target: 5'- gGCGucCGCGAgCGU-CGGCAG-CAGGc -3' miRNA: 3'- gUGCuuGCGCU-GCAuGUCGUCgGUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 16028 | 0.68 | 0.896709 |
Target: 5'- cCGCGGcucGCGCGGCcccACcGCGGCCuGGg -3' miRNA: 3'- -GUGCU---UGCGCUGca-UGuCGUCGGuCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 16319 | 0.66 | 0.936943 |
Target: 5'- gUACGGGuCGCGcACGcccGCGcGCAGCCAGc -3' miRNA: 3'- -GUGCUU-GCGC-UGCa--UGU-CGUCGGUCc -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 16623 | 0.67 | 0.909414 |
Target: 5'- -cCGAGCGCgGugGggugGCcGCGGCCGGcGg -3' miRNA: 3'- guGCUUGCG-CugCa---UGuCGUCGGUC-C- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 16924 | 0.68 | 0.885868 |
Target: 5'- gGCGAGCuccuCGGCGUACcggcugccgccacggGGCGGCgGGGc -3' miRNA: 3'- gUGCUUGc---GCUGCAUG---------------UCGUCGgUCC- -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 17324 | 0.74 | 0.57217 |
Target: 5'- gCGCGGuguGCGCGGCGccgGCGGCcGCCAGc -3' miRNA: 3'- -GUGCU---UGCGCUGCa--UGUCGuCGGUCc -5' |
|||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 17994 | 0.67 | 0.915406 |
Target: 5'- -cCGAGCagaGCGGCGUcuGCgcugAGCGGCCuGGg -3' miRNA: 3'- guGCUUG---CGCUGCA--UG----UCGUCGGuCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home