miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 6787 0.68 0.868513
Target:  5'- gCGCGcGCGCGcACGUACGcGC-GCCuGGc -3'
miRNA:   3'- -GUGCuUGCGC-UGCAUGU-CGuCGGuCC- -5'
23707 5' -54.3 NC_005261.1 + 7919 0.77 0.418168
Target:  5'- aGCGGcuCGCGGCGUGCcucGGCGGCgAGGg -3'
miRNA:   3'- gUGCUu-GCGCUGCAUG---UCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 8456 0.69 0.852302
Target:  5'- cCACG-GCGCccaccgaGugGUACaucugcagcagGGCGGCCAGGc -3'
miRNA:   3'- -GUGCuUGCG-------CugCAUG-----------UCGUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 8744 0.78 0.392126
Target:  5'- aACGGugGCGGCG-GCGGCGGCaGGGg -3'
miRNA:   3'- gUGCUugCGCUGCaUGUCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 9913 0.66 0.936452
Target:  5'- aGCGAGCGCGAcauccuCGUcguggagcucgacGCGGCGGCgGaGGc -3'
miRNA:   3'- gUGCUUGCGCU------GCA-------------UGUCGUCGgU-CC- -5'
23707 5' -54.3 NC_005261.1 + 10545 0.79 0.313288
Target:  5'- aGCGGACGgGGCGgucGCGGC-GCCAGGg -3'
miRNA:   3'- gUGCUUGCgCUGCa--UGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 10625 0.68 0.892714
Target:  5'- gGCGGGCGCGAagacgcccggcugcuCGaGCGGCGgGCCGGc -3'
miRNA:   3'- gUGCUUGCGCU---------------GCaUGUCGU-CGGUCc -5'
23707 5' -54.3 NC_005261.1 + 10719 0.68 0.896709
Target:  5'- --gGGGCGgGACG-GCGGCGGCCGc- -3'
miRNA:   3'- gugCUUGCgCUGCaUGUCGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 10759 0.83 0.188048
Target:  5'- -cCGGACGCGACGgcgGCGGC-GCCGGGg -3'
miRNA:   3'- guGCUUGCGCUGCa--UGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 11436 0.67 0.931925
Target:  5'- -cCGGGCGCGGgG-GCGGCAGCgcgaaccgcgCGGGg -3'
miRNA:   3'- guGCUUGCGCUgCaUGUCGUCG----------GUCC- -5'
23707 5' -54.3 NC_005261.1 + 13008 0.67 0.903181
Target:  5'- gCugGAACGgGuGCGUGCgguacguuccggAGCGGCgCGGGc -3'
miRNA:   3'- -GugCUUGCgC-UGCAUG------------UCGUCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 13079 0.7 0.811104
Target:  5'- cCGCGGGCGCuccgcggccucGGCGUccGCAGC-GCgCAGGg -3'
miRNA:   3'- -GUGCUUGCG-----------CUGCA--UGUCGuCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 14420 0.69 0.845076
Target:  5'- cCGCGAGCGCuACaaACAGC-GUCAGGu -3'
miRNA:   3'- -GUGCUUGCGcUGcaUGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 15369 0.67 0.931925
Target:  5'- gGCGucCGCGAgCGU-CGGCAG-CAGGc -3'
miRNA:   3'- gUGCuuGCGCU-GCAuGUCGUCgGUCC- -5'
23707 5' -54.3 NC_005261.1 + 16028 0.68 0.896709
Target:  5'- cCGCGGcucGCGCGGCcccACcGCGGCCuGGg -3'
miRNA:   3'- -GUGCU---UGCGCUGca-UGuCGUCGGuCC- -5'
23707 5' -54.3 NC_005261.1 + 16319 0.66 0.936943
Target:  5'- gUACGGGuCGCGcACGcccGCGcGCAGCCAGc -3'
miRNA:   3'- -GUGCUU-GCGC-UGCa--UGU-CGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 16623 0.67 0.909414
Target:  5'- -cCGAGCGCgGugGggugGCcGCGGCCGGcGg -3'
miRNA:   3'- guGCUUGCG-CugCa---UGuCGUCGGUC-C- -5'
23707 5' -54.3 NC_005261.1 + 16924 0.68 0.885868
Target:  5'- gGCGAGCuccuCGGCGUACcggcugccgccacggGGCGGCgGGGc -3'
miRNA:   3'- gUGCUUGc---GCUGCAUG---------------UCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 17324 0.74 0.57217
Target:  5'- gCGCGGuguGCGCGGCGccgGCGGCcGCCAGc -3'
miRNA:   3'- -GUGCU---UGCGCUGCa--UGUCGuCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 17994 0.67 0.915406
Target:  5'- -cCGAGCagaGCGGCGUcuGCgcugAGCGGCCuGGg -3'
miRNA:   3'- guGCUUG---CGCUGCA--UG----UCGUCGGuCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.