miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 283 0.67 0.931925
Target:  5'- cCACGGAcCGgGACGgggACGGgGGCCGc- -3'
miRNA:   3'- -GUGCUU-GCgCUGCa--UGUCgUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 349 0.76 0.454472
Target:  5'- gGCGGugGCGGCGgugGCGGCGGCgGcGGc -3'
miRNA:   3'- gUGCUugCGCUGCa--UGUCGUCGgU-CC- -5'
23707 5' -54.3 NC_005261.1 + 386 0.68 0.896709
Target:  5'- gGCGGcUGCGGCGgcCcGCAGCCcGGc -3'
miRNA:   3'- gUGCUuGCGCUGCauGuCGUCGGuCC- -5'
23707 5' -54.3 NC_005261.1 + 422 0.66 0.946255
Target:  5'- gGCGGcUGCGGCGgcggcugcgGCGGCGGCUGcGGc -3'
miRNA:   3'- gUGCUuGCGCUGCa--------UGUCGUCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 469 0.68 0.896049
Target:  5'- cCGCGAGCgggcccggcugcgGCGGCGgcugcgGCGGCGGCUGcGGc -3'
miRNA:   3'- -GUGCUUG-------------CGCUGCa-----UGUCGUCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 1325 0.66 0.950551
Target:  5'- gCGCGGAgGCG-CGggcacccAUGGCGGCgCAGGa -3'
miRNA:   3'- -GUGCUUgCGCuGCa------UGUCGUCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 1808 0.67 0.915406
Target:  5'- gGCGGGCGCagaGACGcccgGC-GCAGCguGGa -3'
miRNA:   3'- gUGCUUGCG---CUGCa---UGuCGUCGguCC- -5'
23707 5' -54.3 NC_005261.1 + 1930 0.66 0.941253
Target:  5'- aCGCGGcagccccagacucGCGCG-CGgGCAGCAGCgAGc -3'
miRNA:   3'- -GUGCU-------------UGCGCuGCaUGUCGUCGgUCc -5'
23707 5' -54.3 NC_005261.1 + 3343 0.66 0.941719
Target:  5'- gACGccUGCGGCG-GCAGCGGCCc-- -3'
miRNA:   3'- gUGCuuGCGCUGCaUGUCGUCGGucc -5'
23707 5' -54.3 NC_005261.1 + 3380 0.69 0.845076
Target:  5'- gCGCGGcgggcccgcACGCGGCc-GCGGCGGCgAGGc -3'
miRNA:   3'- -GUGCU---------UGCGCUGcaUGUCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 3434 0.67 0.915406
Target:  5'- gGCGAggGCGcCGGCGacGCAGaCGGCgAGGa -3'
miRNA:   3'- gUGCU--UGC-GCUGCa-UGUC-GUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 3609 0.72 0.71586
Target:  5'- cCACGAgaGCGCGACccuCAGCucGGCCAGc -3'
miRNA:   3'- -GUGCU--UGCGCUGcauGUCG--UCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 3686 0.7 0.802176
Target:  5'- uGCGAcCGCGGCGcgccCAGaccCGGCCGGGa -3'
miRNA:   3'- gUGCUuGCGCUGCau--GUC---GUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 3769 0.7 0.774487
Target:  5'- uGCGAACGCGGCGUcggaggAgAGCgAGcCCAGa -3'
miRNA:   3'- gUGCUUGCGCUGCA------UgUCG-UC-GGUCc -5'
23707 5' -54.3 NC_005261.1 + 4179 0.72 0.71586
Target:  5'- gCGCGGGuCGCGGCGgccgGCAGCgucGGCguGGc -3'
miRNA:   3'- -GUGCUU-GCGCUGCa---UGUCG---UCGguCC- -5'
23707 5' -54.3 NC_005261.1 + 4737 0.67 0.931925
Target:  5'- gCGCGAGCGCuGCGUGCucgccuccGGC-GCCAa- -3'
miRNA:   3'- -GUGCUUGCGcUGCAUG--------UCGuCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 5341 0.69 0.83686
Target:  5'- gCACGugcuGCGCGGCGU-UGGCGGCgAGu -3'
miRNA:   3'- -GUGCu---UGCGCUGCAuGUCGUCGgUCc -5'
23707 5' -54.3 NC_005261.1 + 5749 0.78 0.392126
Target:  5'- aCGCGGGCGCGGCGgcccUAGCGGCCGc- -3'
miRNA:   3'- -GUGCUUGCGCUGCau--GUCGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 5797 0.7 0.802176
Target:  5'- cCGCGGACGCccGGCccgGCgAGCcGCCAGGg -3'
miRNA:   3'- -GUGCUUGCG--CUGca-UG-UCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 6235 0.68 0.883065
Target:  5'- -uCGAGCGCGcCGccgcUGCAgGCAGCgCGGGc -3'
miRNA:   3'- guGCUUGCGCuGC----AUGU-CGUCG-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.