miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 10759 0.83 0.188048
Target:  5'- -cCGGACGCGACGgcgGCGGC-GCCGGGg -3'
miRNA:   3'- guGCUUGCGCUGCa--UGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 34068 0.83 0.192854
Target:  5'- gCGCGGACGCGcGCGUcCAGCGGCCGGc -3'
miRNA:   3'- -GUGCUUGCGC-UGCAuGUCGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 102842 0.82 0.213167
Target:  5'- aACGGugGCGGCGgcgGCAGCAGCCGc- -3'
miRNA:   3'- gUGCUugCGCUGCa--UGUCGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 68634 0.8 0.27861
Target:  5'- gGCGAGCGCGGgGgGCGGC-GCCGGGg -3'
miRNA:   3'- gUGCUUGCGCUgCaUGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 58573 0.8 0.306099
Target:  5'- aCAUGcGCGCGGCGgcGCGGCGGCCAGc -3'
miRNA:   3'- -GUGCuUGCGCUGCa-UGUCGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 65920 0.8 0.306099
Target:  5'- gGCGAGCGCGagcGCGgcCAGC-GCCAGGa -3'
miRNA:   3'- gUGCUUGCGC---UGCauGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 31187 0.79 0.312563
Target:  5'- gCGCGAAgGCGGCGUGCAuguacauGCucGCCAGGa -3'
miRNA:   3'- -GUGCUUgCGCUGCAUGU-------CGu-CGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 10545 0.79 0.313288
Target:  5'- aGCGGACGgGGCGgucGCGGC-GCCAGGg -3'
miRNA:   3'- gUGCUUGCgCUGCa--UGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 65008 0.79 0.313288
Target:  5'- gCGCGGccACGCGcGCGUGCAGCA-CCAGGu -3'
miRNA:   3'- -GUGCU--UGCGC-UGCAUGUCGUcGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 56637 0.79 0.320604
Target:  5'- gACGGACGCGAag-ACGGCgcgGGCCAGGa -3'
miRNA:   3'- gUGCUUGCGCUgcaUGUCG---UCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 44625 0.79 0.343316
Target:  5'- gCGCGcGCGCGGCGUcGCAGCAGgugcccCCGGGa -3'
miRNA:   3'- -GUGCuUGCGCUGCA-UGUCGUC------GGUCC- -5'
23707 5' -54.3 NC_005261.1 + 127808 0.78 0.356691
Target:  5'- -cCGAAUGCGACGUGagcggcagcgacucCAGCAGCgAGGa -3'
miRNA:   3'- guGCUUGCGCUGCAU--------------GUCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 41445 0.78 0.359089
Target:  5'- cCACGGGCGCaucGGCGggGCAGCcGCCGGGc -3'
miRNA:   3'- -GUGCUUGCG---CUGCa-UGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 42745 0.78 0.367164
Target:  5'- gGCGAGCGCGACGcGCGGC-GCCGcgacGGg -3'
miRNA:   3'- gUGCUUGCGCUGCaUGUCGuCGGU----CC- -5'
23707 5' -54.3 NC_005261.1 + 5749 0.78 0.392126
Target:  5'- aCGCGGGCGCGGCGgcccUAGCGGCCGc- -3'
miRNA:   3'- -GUGCUUGCGCUGCau--GUCGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 8744 0.78 0.392126
Target:  5'- aACGGugGCGGCG-GCGGCGGCaGGGg -3'
miRNA:   3'- gUGCUugCGCUGCaUGUCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 73958 0.77 0.400689
Target:  5'- cCACGcGCGCGuuGUGCAGCAGCacguugaAGGa -3'
miRNA:   3'- -GUGCuUGCGCugCAUGUCGUCGg------UCC- -5'
23707 5' -54.3 NC_005261.1 + 126533 0.77 0.40937
Target:  5'- uCGCGAGCGCGAgCGU-CAGCuGCgGGGc -3'
miRNA:   3'- -GUGCUUGCGCU-GCAuGUCGuCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 55013 0.77 0.40937
Target:  5'- gGCGAGCGCGGCGagcGCGGCcucGGCCgAGGc -3'
miRNA:   3'- gUGCUUGCGCUGCa--UGUCG---UCGG-UCC- -5'
23707 5' -54.3 NC_005261.1 + 23257 0.77 0.40937
Target:  5'- cCACGAugGUGuCGUACAcgAGCCGGGg -3'
miRNA:   3'- -GUGCUugCGCuGCAUGUcgUCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.