miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23707 5' -54.3 NC_005261.1 + 7919 0.77 0.418168
Target:  5'- aGCGGcuCGCGGCGUGCcucGGCGGCgAGGg -3'
miRNA:   3'- gUGCUu-GCGCUGCAUG---UCGUCGgUCC- -5'
23707 5' -54.3 NC_005261.1 + 137345 0.77 0.427079
Target:  5'- gGCGGGCgGCGGCGU-UAGCGGCgCGGGg -3'
miRNA:   3'- gUGCUUG-CGCUGCAuGUCGUCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 65308 0.77 0.436102
Target:  5'- cCAgGAGCGCGuagGCGUugcgcACGGCGGCCAGa -3'
miRNA:   3'- -GUgCUUGCGC---UGCA-----UGUCGUCGGUCc -5'
23707 5' -54.3 NC_005261.1 + 41781 0.76 0.445234
Target:  5'- gCACGucgcGCGUGGCGcGCAGCcGCCGGGc -3'
miRNA:   3'- -GUGCu---UGCGCUGCaUGUCGuCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 122305 0.76 0.445234
Target:  5'- gACGAaguACGCGGCGgcaccgGCGGCGGCCAc- -3'
miRNA:   3'- gUGCU---UGCGCUGCa-----UGUCGUCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 63516 0.76 0.445234
Target:  5'- gGCGGACGCGGCGgcgGCGGCggAGUCGGcGg -3'
miRNA:   3'- gUGCUUGCGCUGCa--UGUCG--UCGGUC-C- -5'
23707 5' -54.3 NC_005261.1 + 349 0.76 0.454472
Target:  5'- gGCGGugGCGGCGgugGCGGCGGCgGcGGc -3'
miRNA:   3'- gUGCUugCGCUGCa--UGUCGUCGgU-CC- -5'
23707 5' -54.3 NC_005261.1 + 63682 0.76 0.454472
Target:  5'- gCGCGGGCGCGGaacCGggccgcgGCAGCGGCCGcGGa -3'
miRNA:   3'- -GUGCUUGCGCU---GCa------UGUCGUCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 34535 0.76 0.454472
Target:  5'- gCGCGAGcCGCGGCGgcggcgggGCGGCGccGCCGGGc -3'
miRNA:   3'- -GUGCUU-GCGCUGCa-------UGUCGU--CGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 138020 0.76 0.454472
Target:  5'- gGCGGugGCGGCGgugGCGGCGGCgGcGGc -3'
miRNA:   3'- gUGCUugCGCUGCa--UGUCGUCGgU-CC- -5'
23707 5' -54.3 NC_005261.1 + 52489 0.76 0.457263
Target:  5'- gCACGAACGCcucgguggccugcucGAcCGUGCucuggauGGCGGCCAGGg -3'
miRNA:   3'- -GUGCUUGCG---------------CU-GCAUG-------UCGUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 94192 0.76 0.463813
Target:  5'- aGCGAGCGCGAgcUGCAgGCGGcCCGGGa -3'
miRNA:   3'- gUGCUUGCGCUgcAUGU-CGUC-GGUCC- -5'
23707 5' -54.3 NC_005261.1 + 19464 0.76 0.473253
Target:  5'- cCGCGGGCGCGGCGccgcGCGGCuGGCCGcGGc -3'
miRNA:   3'- -GUGCUUGCGCUGCa---UGUCG-UCGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 99051 0.76 0.477056
Target:  5'- cCGCGGccaagcugcGCGCGGCGgcagccgccucauCGGCGGCCGGGg -3'
miRNA:   3'- -GUGCU---------UGCGCUGCau-----------GUCGUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 22991 0.76 0.492416
Target:  5'- aGCGGGuCGuCGACcgcggGCGGCAGCCGGGg -3'
miRNA:   3'- gUGCUU-GC-GCUGca---UGUCGUCGGUCC- -5'
23707 5' -54.3 NC_005261.1 + 96511 0.76 0.492416
Target:  5'- uGCGGGauCGCGGCGUACucgcGCAGCguGGg -3'
miRNA:   3'- gUGCUU--GCGCUGCAUGu---CGUCGguCC- -5'
23707 5' -54.3 NC_005261.1 + 119068 0.75 0.502131
Target:  5'- uGCGGcagucguaGCGCGcACGUGcCAGCAGCuCGGGg -3'
miRNA:   3'- gUGCU--------UGCGC-UGCAU-GUCGUCG-GUCC- -5'
23707 5' -54.3 NC_005261.1 + 35593 0.75 0.521805
Target:  5'- cCGCGAGCGCGGCGccCAGCcGCCGc- -3'
miRNA:   3'- -GUGCUUGCGCUGCauGUCGuCGGUcc -5'
23707 5' -54.3 NC_005261.1 + 31989 0.75 0.521805
Target:  5'- gGCGAcauccGCGCGGCGcUGCAGCGgGCCGcGGu -3'
miRNA:   3'- gUGCU-----UGCGCUGC-AUGUCGU-CGGU-CC- -5'
23707 5' -54.3 NC_005261.1 + 81097 0.75 0.525777
Target:  5'- uCGCGAgcagccGCGCGACGUccucguccaugacucGCAGCuGCCAGc -3'
miRNA:   3'- -GUGCU------UGCGCUGCA---------------UGUCGuCGGUCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.