Results 21 - 40 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23707 | 5' | -54.3 | NC_005261.1 | + | 7919 | 0.77 | 0.418168 |
Target: 5'- aGCGGcuCGCGGCGUGCcucGGCGGCgAGGg -3' miRNA: 3'- gUGCUu-GCGCUGCAUG---UCGUCGgUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 137345 | 0.77 | 0.427079 |
Target: 5'- gGCGGGCgGCGGCGU-UAGCGGCgCGGGg -3' miRNA: 3'- gUGCUUG-CGCUGCAuGUCGUCG-GUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 65308 | 0.77 | 0.436102 |
Target: 5'- cCAgGAGCGCGuagGCGUugcgcACGGCGGCCAGa -3' miRNA: 3'- -GUgCUUGCGC---UGCA-----UGUCGUCGGUCc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 41781 | 0.76 | 0.445234 |
Target: 5'- gCACGucgcGCGUGGCGcGCAGCcGCCGGGc -3' miRNA: 3'- -GUGCu---UGCGCUGCaUGUCGuCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 122305 | 0.76 | 0.445234 |
Target: 5'- gACGAaguACGCGGCGgcaccgGCGGCGGCCAc- -3' miRNA: 3'- gUGCU---UGCGCUGCa-----UGUCGUCGGUcc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 63516 | 0.76 | 0.445234 |
Target: 5'- gGCGGACGCGGCGgcgGCGGCggAGUCGGcGg -3' miRNA: 3'- gUGCUUGCGCUGCa--UGUCG--UCGGUC-C- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 349 | 0.76 | 0.454472 |
Target: 5'- gGCGGugGCGGCGgugGCGGCGGCgGcGGc -3' miRNA: 3'- gUGCUugCGCUGCa--UGUCGUCGgU-CC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 63682 | 0.76 | 0.454472 |
Target: 5'- gCGCGGGCGCGGaacCGggccgcgGCAGCGGCCGcGGa -3' miRNA: 3'- -GUGCUUGCGCU---GCa------UGUCGUCGGU-CC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 34535 | 0.76 | 0.454472 |
Target: 5'- gCGCGAGcCGCGGCGgcggcgggGCGGCGccGCCGGGc -3' miRNA: 3'- -GUGCUU-GCGCUGCa-------UGUCGU--CGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 138020 | 0.76 | 0.454472 |
Target: 5'- gGCGGugGCGGCGgugGCGGCGGCgGcGGc -3' miRNA: 3'- gUGCUugCGCUGCa--UGUCGUCGgU-CC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 52489 | 0.76 | 0.457263 |
Target: 5'- gCACGAACGCcucgguggccugcucGAcCGUGCucuggauGGCGGCCAGGg -3' miRNA: 3'- -GUGCUUGCG---------------CU-GCAUG-------UCGUCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 94192 | 0.76 | 0.463813 |
Target: 5'- aGCGAGCGCGAgcUGCAgGCGGcCCGGGa -3' miRNA: 3'- gUGCUUGCGCUgcAUGU-CGUC-GGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 19464 | 0.76 | 0.473253 |
Target: 5'- cCGCGGGCGCGGCGccgcGCGGCuGGCCGcGGc -3' miRNA: 3'- -GUGCUUGCGCUGCa---UGUCG-UCGGU-CC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 99051 | 0.76 | 0.477056 |
Target: 5'- cCGCGGccaagcugcGCGCGGCGgcagccgccucauCGGCGGCCGGGg -3' miRNA: 3'- -GUGCU---------UGCGCUGCau-----------GUCGUCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 22991 | 0.76 | 0.492416 |
Target: 5'- aGCGGGuCGuCGACcgcggGCGGCAGCCGGGg -3' miRNA: 3'- gUGCUU-GC-GCUGca---UGUCGUCGGUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 96511 | 0.76 | 0.492416 |
Target: 5'- uGCGGGauCGCGGCGUACucgcGCAGCguGGg -3' miRNA: 3'- gUGCUU--GCGCUGCAUGu---CGUCGguCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 119068 | 0.75 | 0.502131 |
Target: 5'- uGCGGcagucguaGCGCGcACGUGcCAGCAGCuCGGGg -3' miRNA: 3'- gUGCU--------UGCGC-UGCAU-GUCGUCG-GUCC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 35593 | 0.75 | 0.521805 |
Target: 5'- cCGCGAGCGCGGCGccCAGCcGCCGc- -3' miRNA: 3'- -GUGCUUGCGCUGCauGUCGuCGGUcc -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 31989 | 0.75 | 0.521805 |
Target: 5'- gGCGAcauccGCGCGGCGcUGCAGCGgGCCGcGGu -3' miRNA: 3'- gUGCU-----UGCGCUGC-AUGUCGU-CGGU-CC- -5' |
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23707 | 5' | -54.3 | NC_005261.1 | + | 81097 | 0.75 | 0.525777 |
Target: 5'- uCGCGAgcagccGCGCGACGUccucguccaugacucGCAGCuGCCAGc -3' miRNA: 3'- -GUGCU------UGCGCUGCA---------------UGUCGuCGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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