miRNA display CGI


Results 41 - 60 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23710 3' -60.7 NC_005261.1 + 30629 0.66 0.65237
Target:  5'- cGCCccaGCGC--UCGCUGGCGCGcGGu -3'
miRNA:   3'- -CGGuucCGCGucAGCGACCGCGC-CUg -5'
23710 3' -60.7 NC_005261.1 + 17750 0.66 0.65237
Target:  5'- gGCCcuGuGCcuGCGG-CGCaaGGCGCGGGCg -3'
miRNA:   3'- -CGGuuC-CG--CGUCaGCGa-CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 47615 0.66 0.642341
Target:  5'- cGCCGAGGCcgcuGCGG-CgGCcGGCGCGcGCu -3'
miRNA:   3'- -CGGUUCCG----CGUCaG-CGaCCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 46088 0.66 0.642341
Target:  5'- gGCCAGGaugagcgccGCGCGGUcCGCgcGGCccauccGCGGGCc -3'
miRNA:   3'- -CGGUUC---------CGCGUCA-GCGa-CCG------CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 57190 0.66 0.642341
Target:  5'- gGCCGcgcGGGCGCGagccggaccaccGUgGCgcccgagGGCGgCGGGCa -3'
miRNA:   3'- -CGGU---UCCGCGU------------CAgCGa------CCGC-GCCUG- -5'
23710 3' -60.7 NC_005261.1 + 137100 0.67 0.632305
Target:  5'- gGCCGGcGGgGCucccGUCGCcGGCgGCGGcACg -3'
miRNA:   3'- -CGGUU-CCgCGu---CAGCGaCCG-CGCC-UG- -5'
23710 3' -60.7 NC_005261.1 + 64736 0.67 0.632305
Target:  5'- uCCAGGuagacGCGCAcGaCGCggagggcgGGCGCGGGCu -3'
miRNA:   3'- cGGUUC-----CGCGU-CaGCGa-------CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 114970 0.67 0.632305
Target:  5'- cGgCGAGGCGCuG-CGCgucggGGCGCcaguccucaGGGCa -3'
miRNA:   3'- -CgGUUCCGCGuCaGCGa----CCGCG---------CCUG- -5'
23710 3' -60.7 NC_005261.1 + 76341 0.67 0.632305
Target:  5'- gGCCGgcuccAGGCGCAG-CaGCUGccccgccucGCGCGaGGCg -3'
miRNA:   3'- -CGGU-----UCCGCGUCaG-CGAC---------CGCGC-CUG- -5'
23710 3' -60.7 NC_005261.1 + 68067 0.67 0.632305
Target:  5'- uGCCGcaguAGGCGCAcgcGUCGagcgGGCcGgGGACc -3'
miRNA:   3'- -CGGU----UCCGCGU---CAGCga--CCG-CgCCUG- -5'
23710 3' -60.7 NC_005261.1 + 40694 0.67 0.632305
Target:  5'- uGCCGGGGCGguGgggagacgGCgggUGGCcCGGGCg -3'
miRNA:   3'- -CGGUUCCGCguCag------CG---ACCGcGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 31729 0.67 0.632305
Target:  5'- cGCC--GGCGCGGUCGUccaGCGCGcGCc -3'
miRNA:   3'- -CGGuuCCGCGUCAGCGac-CGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 122529 0.67 0.632305
Target:  5'- -aCGAGGuCGCggcaauggcucgAGUCGCcgacGCGCGGGCg -3'
miRNA:   3'- cgGUUCC-GCG------------UCAGCGac--CGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 106072 0.67 0.632305
Target:  5'- cGCCGcGGcCGCGG-CGCccGGCGUGGcCu -3'
miRNA:   3'- -CGGUuCC-GCGUCaGCGa-CCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 123356 0.67 0.626282
Target:  5'- uGCCgGGGGCGUagcggggggggucggGGUCGC-GGCGgGGuCg -3'
miRNA:   3'- -CGG-UUCCGCG---------------UCAGCGaCCGCgCCuG- -5'
23710 3' -60.7 NC_005261.1 + 40103 0.67 0.622268
Target:  5'- cGCCc-GGCGCGucCGCggccucgGGgGCGGGCg -3'
miRNA:   3'- -CGGuuCCGCGUcaGCGa------CCgCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 29943 0.67 0.622268
Target:  5'- gGCCGAGcaGCGC-GUCGUcGGCGaGGAUc -3'
miRNA:   3'- -CGGUUC--CGCGuCAGCGaCCGCgCCUG- -5'
23710 3' -60.7 NC_005261.1 + 4678 0.67 0.622268
Target:  5'- aCCccGGCGCcGUCuacgucgggGC-GGCGCGGACa -3'
miRNA:   3'- cGGuuCCGCGuCAG---------CGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 4197 0.67 0.622268
Target:  5'- gGCCu-GGCGCGGcucggCGCgcgGGuCGCGG-Cg -3'
miRNA:   3'- -CGGuuCCGCGUCa----GCGa--CC-GCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 41019 0.67 0.622268
Target:  5'- gGCCcGGGCGU-GUCGCc-GCGCGG-Cu -3'
miRNA:   3'- -CGGuUCCGCGuCAGCGacCGCGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.