miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23710 3' -60.7 NC_005261.1 + 32271 0.82 0.071974
Target:  5'- cGCCGAGGCGCcGcCGCUGGUgcuggagGCGGGCg -3'
miRNA:   3'- -CGGUUCCGCGuCaGCGACCG-------CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 72845 0.81 0.093711
Target:  5'- gGCCAGGGCGcCAG-CGCccaGGCGUGGACc -3'
miRNA:   3'- -CGGUUCCGC-GUCaGCGa--CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 77070 0.8 0.101285
Target:  5'- gGCCGGugccGCGCgAGgCGCUGGCGCGGACg -3'
miRNA:   3'- -CGGUUc---CGCG-UCaGCGACCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 69522 0.8 0.109435
Target:  5'- uGCCGGagcuGGCGCGGgCGCUGGCGCGcGCg -3'
miRNA:   3'- -CGGUU----CCGCGUCaGCGACCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 123175 0.79 0.124395
Target:  5'- cGCgcGGGCGUGGUgGCUGGUGUGGGCg -3'
miRNA:   3'- -CGguUCCGCGUCAgCGACCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 71181 0.79 0.124395
Target:  5'- cGUCcGGGCGCAGcUCGCggGGCGCGGcCa -3'
miRNA:   3'- -CGGuUCCGCGUC-AGCGa-CCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 1193 0.79 0.127606
Target:  5'- gGCCGGGGC-CGGgCGC-GGCGCGGACc -3'
miRNA:   3'- -CGGUUCCGcGUCaGCGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 85945 0.78 0.13426
Target:  5'- gGCCAGGGCGCcgcGGaaGCUGGCGUGGuCc -3'
miRNA:   3'- -CGGUUCCGCG---UCagCGACCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 33596 0.78 0.137706
Target:  5'- aCCAGGG-GCGG-CGCcGGCGCGGGCg -3'
miRNA:   3'- cGGUUCCgCGUCaGCGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 33827 0.78 0.148535
Target:  5'- gGCCGggGGGCGCGGgcccccuggCGCUGG-GCGGGCc -3'
miRNA:   3'- -CGGU--UCCGCGUCa--------GCGACCgCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 2544 0.77 0.156179
Target:  5'- cGCCAGcGcCGCGG-CGCUgGGCGCGGGCg -3'
miRNA:   3'- -CGGUUcC-GCGUCaGCGA-CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 23738 0.77 0.164178
Target:  5'- cGCCGAGGCGC-GUCcgGgaGGgGCGGGCu -3'
miRNA:   3'- -CGGUUCCGCGuCAG--CgaCCgCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 28765 0.77 0.164178
Target:  5'- gGCCgGGGGCGCcugGGcCGC-GGCGCGGGCg -3'
miRNA:   3'- -CGG-UUCCGCG---UCaGCGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 77653 0.76 0.176867
Target:  5'- cGCCGAcGGCcggcgccuGCAGgCGCagGGCGCGGACg -3'
miRNA:   3'- -CGGUU-CCG--------CGUCaGCGa-CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 18368 0.76 0.19042
Target:  5'- cGCUAAGcGCGUAGUCGgaGGUcccaaagccgcuGCGGACg -3'
miRNA:   3'- -CGGUUC-CGCGUCAGCgaCCG------------CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 13667 0.76 0.195137
Target:  5'- cGCCGcgggggGGGCGCGGggcgCGCgGGCGUGGGg -3'
miRNA:   3'- -CGGU------UCCGCGUCa---GCGaCCGCGCCUg -5'
23710 3' -60.7 NC_005261.1 + 59469 0.76 0.195137
Target:  5'- cGUCGGGGgGCAG-CGCcGGCGCGGcCg -3'
miRNA:   3'- -CGGUUCCgCGUCaGCGaCCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 118374 0.76 0.199955
Target:  5'- cGCUggGGCGCGcGgcccgaggCGCUGGCggccGCGGGCg -3'
miRNA:   3'- -CGGuuCCGCGU-Ca-------GCGACCG----CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 99784 0.75 0.204877
Target:  5'- gGCCcGGGuCcCAGUCGC-GGCGCGGAUg -3'
miRNA:   3'- -CGGuUCC-GcGUCAGCGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 36900 0.75 0.215036
Target:  5'- cGCCAAGGCGCGaccccgCGCUGG-GCcgGGACg -3'
miRNA:   3'- -CGGUUCCGCGUca----GCGACCgCG--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.