miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23710 3' -60.7 NC_005261.1 + 199 0.66 0.692249
Target:  5'- --gAGGGCGCGGgcggGCggggGGCaggGCGGACg -3'
miRNA:   3'- cggUUCCGCGUCag--CGa---CCG---CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 1193 0.79 0.127606
Target:  5'- gGCCGGGGC-CGGgCGC-GGCGCGGACc -3'
miRNA:   3'- -CGGUUCCGcGUCaGCGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 1344 0.69 0.49482
Target:  5'- --gAGGGCggaccgucgGCAGgcgCGgaGGCGCGGGCa -3'
miRNA:   3'- cggUUCCG---------CGUCa--GCgaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 1513 0.67 0.582265
Target:  5'- gGCguAGGCGCGGcCGaugaaguguaCUGGCGUGGu- -3'
miRNA:   3'- -CGguUCCGCGUCaGC----------GACCGCGCCug -5'
23710 3' -60.7 NC_005261.1 + 1794 0.67 0.582265
Target:  5'- cGCCc-GGCGCAG-CGUggagcGGCGCGcGCg -3'
miRNA:   3'- -CGGuuCCGCGUCaGCGa----CCGCGCcUG- -5'
23710 3' -60.7 NC_005261.1 + 1839 0.68 0.542808
Target:  5'- gGCCAgcugguGGGgGCAGaaggCGCgGGUggGCGGGCg -3'
miRNA:   3'- -CGGU------UCCgCGUCa---GCGaCCG--CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 1975 0.68 0.542808
Target:  5'- uGUCgGAGcCGCAGUCGCaGGCccccucGCGGGCg -3'
miRNA:   3'- -CGG-UUCcGCGUCAGCGaCCG------CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 2544 0.77 0.156179
Target:  5'- cGCCAGcGcCGCGG-CGCUgGGCGCGGGCg -3'
miRNA:   3'- -CGGUUcC-GCGUCaGCGA-CCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 3539 0.72 0.312468
Target:  5'- cGCCucGGcGCGCAG-CGCggcgGGCGCGG-Cg -3'
miRNA:   3'- -CGGu-UC-CGCGUCaGCGa---CCGCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 4026 0.7 0.422435
Target:  5'- cGCgCGGGGgGCGGcgcCGCUGGCGaCGG-Cg -3'
miRNA:   3'- -CG-GUUCCgCGUCa--GCGACCGC-GCCuG- -5'
23710 3' -60.7 NC_005261.1 + 4197 0.67 0.622268
Target:  5'- gGCCu-GGCGCGGcucggCGCgcgGGuCGCGG-Cg -3'
miRNA:   3'- -CGGuuCCGCGUCa----GCGa--CC-GCGCCuG- -5'
23710 3' -60.7 NC_005261.1 + 4678 0.67 0.622268
Target:  5'- aCCccGGCGCcGUCuacgucgggGC-GGCGCGGACa -3'
miRNA:   3'- cGGuuCCGCGuCAG---------CGaCCGCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 5835 0.68 0.527264
Target:  5'- gGgCGAGGCGCAGUacgGCUGcgaagacgucggcgcGCccGCGGACg -3'
miRNA:   3'- -CgGUUCCGCGUCAg--CGAC---------------CG--CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 6228 0.69 0.49482
Target:  5'- cGCCGccGCuGCAGgcagCGCgGGCGgGGGCc -3'
miRNA:   3'- -CGGUucCG-CGUCa---GCGaCCGCgCCUG- -5'
23710 3' -60.7 NC_005261.1 + 6324 0.7 0.431139
Target:  5'- gGCCGAGGuCGCGGccgccgucgcCGCUGcCGCGGAg -3'
miRNA:   3'- -CGGUUCC-GCGUCa---------GCGACcGCGCCUg -5'
23710 3' -60.7 NC_005261.1 + 6407 0.69 0.485449
Target:  5'- gGCCAccAGGCcuucGCAGUCGCggacGGCGacaacuGGGCc -3'
miRNA:   3'- -CGGU--UCCG----CGUCAGCGa---CCGCg-----CCUG- -5'
23710 3' -60.7 NC_005261.1 + 6673 0.68 0.542808
Target:  5'- aGCCAGgcGGCGCGcuUCGgUGGgugcugcaCGCGGACg -3'
miRNA:   3'- -CGGUU--CCGCGUc-AGCgACC--------GCGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 7617 0.68 0.533075
Target:  5'- aGCagcuGGCGCcccgCGCUGGCcgcaccGCGGACg -3'
miRNA:   3'- -CGguu-CCGCGuca-GCGACCG------CGCCUG- -5'
23710 3' -60.7 NC_005261.1 + 9540 0.67 0.612239
Target:  5'- cGCCAcGGUGCcccgccucGUCGCUgccgacgacgaGGCGgGGGCc -3'
miRNA:   3'- -CGGUuCCGCGu-------CAGCGA-----------CCGCgCCUG- -5'
23710 3' -60.7 NC_005261.1 + 10740 0.66 0.672373
Target:  5'- cGCCGGGGgGCg--CGCggguucggGGCG-GGACg -3'
miRNA:   3'- -CGGUUCCgCGucaGCGa-------CCGCgCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.