miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 48329 0.67 0.917638
Target:  5'- cGGGcucggGGGCGcgcGCgGCGAGGCCGaGGAg -3'
miRNA:   3'- -CCCaa---CUCGU---UGgCGUUCUGGCgUCU- -5'
23715 3' -53.8 NC_005261.1 + 117906 0.67 0.911669
Target:  5'- cGGG-UGAGCGGCUGCGcgggaacgaAGGCCGg--- -3'
miRNA:   3'- -CCCaACUCGUUGGCGU---------UCUGGCgucu -5'
23715 3' -53.8 NC_005261.1 + 19955 0.67 0.911669
Target:  5'- gGGGUgGGGCGGCCucggcugcgGCAGcGACCGCc-- -3'
miRNA:   3'- -CCCAaCUCGUUGG---------CGUU-CUGGCGucu -5'
23715 3' -53.8 NC_005261.1 + 131920 0.67 0.911669
Target:  5'- cGGGcuuuUUG-GC-GCgCGCGGGACCGCGGu -3'
miRNA:   3'- -CCC----AACuCGuUG-GCGUUCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 1398 0.68 0.905453
Target:  5'- cGGGcgccGCGGCCGCGGcGGCgGCGGGg -3'
miRNA:   3'- -CCCaacuCGUUGGCGUU-CUGgCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 138121 0.68 0.905453
Target:  5'- cGGGgacGGgGGCCGCGAcGGCCgGCGGGa -3'
miRNA:   3'- -CCCaacUCgUUGGCGUU-CUGG-CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 450 0.68 0.905453
Target:  5'- cGGGgacGGgGGCCGCGAcGGCCgGCGGGa -3'
miRNA:   3'- -CCCaacUCgUUGGCGUU-CUGG-CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 109021 0.68 0.901606
Target:  5'- cGGGccGAacgccgccguggcgcGCAGCCGCGcGGCCGcCAGGu -3'
miRNA:   3'- -CCCaaCU---------------CGUUGGCGUuCUGGC-GUCU- -5'
23715 3' -53.8 NC_005261.1 + 56118 0.68 0.898992
Target:  5'- cGGcggGAGCGcGCCGCAGGGCggggggCGCGGGc -3'
miRNA:   3'- cCCaa-CUCGU-UGGCGUUCUG------GCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 97663 0.68 0.898992
Target:  5'- uGGGggGccGGCGuCCGCGGGGCUuggGCGGGg -3'
miRNA:   3'- -CCCaaC--UCGUuGGCGUUCUGG---CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 115416 0.68 0.898992
Target:  5'- cGGGc--GGCAGCCG--GGGCCGCGGc -3'
miRNA:   3'- -CCCaacUCGUUGGCguUCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 94266 0.68 0.898992
Target:  5'- ----aGGGCGgcGCCGCGAGGCucuuggCGCAGAg -3'
miRNA:   3'- cccaaCUCGU--UGGCGUUCUG------GCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 29420 0.68 0.898992
Target:  5'- -----cGGCGGCCGCGGGGcCCGCGGc -3'
miRNA:   3'- cccaacUCGUUGGCGUUCU-GGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 104095 0.68 0.89229
Target:  5'- aGGGcgGcGGCGcuCCGCGcGACCGCAGc -3'
miRNA:   3'- -CCCaaC-UCGUu-GGCGUuCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 28266 0.68 0.89229
Target:  5'- cGGggGGGCGcuguugccGCCGCcgcGGCCGCGGu -3'
miRNA:   3'- cCCaaCUCGU--------UGGCGuu-CUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 49068 0.68 0.89229
Target:  5'- aGGUUcgcgaagcGGGCAcgcGCCGCGGGcCCGCuGAg -3'
miRNA:   3'- cCCAA--------CUCGU---UGGCGUUCuGGCGuCU- -5'
23715 3' -53.8 NC_005261.1 + 44026 0.68 0.885349
Target:  5'- cGGc-GGGCGGCCGCcgcgcggcGGCCGCGGGc -3'
miRNA:   3'- cCCaaCUCGUUGGCGuu------CUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 13114 0.68 0.885349
Target:  5'- gGGGgcGucGGCGGCCGCGGGGCgCGUg-- -3'
miRNA:   3'- -CCCaaC--UCGUUGGCGUUCUG-GCGucu -5'
23715 3' -53.8 NC_005261.1 + 98135 0.68 0.884642
Target:  5'- cGGcaccGGCGGCCgucggcgGCAAGGCCGCGGGc -3'
miRNA:   3'- cCCaac-UCGUUGG-------CGUUCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 32976 0.68 0.878175
Target:  5'- cGGGagagGAGgGACCGCGGaggagggggccGACCGgGGAa -3'
miRNA:   3'- -CCCaa--CUCgUUGGCGUU-----------CUGGCgUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.