Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 48329 | 0.67 | 0.917638 |
Target: 5'- cGGGcucggGGGCGcgcGCgGCGAGGCCGaGGAg -3' miRNA: 3'- -CCCaa---CUCGU---UGgCGUUCUGGCgUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 117906 | 0.67 | 0.911669 |
Target: 5'- cGGG-UGAGCGGCUGCGcgggaacgaAGGCCGg--- -3' miRNA: 3'- -CCCaACUCGUUGGCGU---------UCUGGCgucu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 19955 | 0.67 | 0.911669 |
Target: 5'- gGGGUgGGGCGGCCucggcugcgGCAGcGACCGCc-- -3' miRNA: 3'- -CCCAaCUCGUUGG---------CGUU-CUGGCGucu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 131920 | 0.67 | 0.911669 |
Target: 5'- cGGGcuuuUUG-GC-GCgCGCGGGACCGCGGu -3' miRNA: 3'- -CCC----AACuCGuUG-GCGUUCUGGCGUCu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 1398 | 0.68 | 0.905453 |
Target: 5'- cGGGcgccGCGGCCGCGGcGGCgGCGGGg -3' miRNA: 3'- -CCCaacuCGUUGGCGUU-CUGgCGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 138121 | 0.68 | 0.905453 |
Target: 5'- cGGGgacGGgGGCCGCGAcGGCCgGCGGGa -3' miRNA: 3'- -CCCaacUCgUUGGCGUU-CUGG-CGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 450 | 0.68 | 0.905453 |
Target: 5'- cGGGgacGGgGGCCGCGAcGGCCgGCGGGa -3' miRNA: 3'- -CCCaacUCgUUGGCGUU-CUGG-CGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 109021 | 0.68 | 0.901606 |
Target: 5'- cGGGccGAacgccgccguggcgcGCAGCCGCGcGGCCGcCAGGu -3' miRNA: 3'- -CCCaaCU---------------CGUUGGCGUuCUGGC-GUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 56118 | 0.68 | 0.898992 |
Target: 5'- cGGcggGAGCGcGCCGCAGGGCggggggCGCGGGc -3' miRNA: 3'- cCCaa-CUCGU-UGGCGUUCUG------GCGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 97663 | 0.68 | 0.898992 |
Target: 5'- uGGGggGccGGCGuCCGCGGGGCUuggGCGGGg -3' miRNA: 3'- -CCCaaC--UCGUuGGCGUUCUGG---CGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 115416 | 0.68 | 0.898992 |
Target: 5'- cGGGc--GGCAGCCG--GGGCCGCGGc -3' miRNA: 3'- -CCCaacUCGUUGGCguUCUGGCGUCu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 94266 | 0.68 | 0.898992 |
Target: 5'- ----aGGGCGgcGCCGCGAGGCucuuggCGCAGAg -3' miRNA: 3'- cccaaCUCGU--UGGCGUUCUG------GCGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 29420 | 0.68 | 0.898992 |
Target: 5'- -----cGGCGGCCGCGGGGcCCGCGGc -3' miRNA: 3'- cccaacUCGUUGGCGUUCU-GGCGUCu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 104095 | 0.68 | 0.89229 |
Target: 5'- aGGGcgGcGGCGcuCCGCGcGACCGCAGc -3' miRNA: 3'- -CCCaaC-UCGUu-GGCGUuCUGGCGUCu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 28266 | 0.68 | 0.89229 |
Target: 5'- cGGggGGGCGcuguugccGCCGCcgcGGCCGCGGu -3' miRNA: 3'- cCCaaCUCGU--------UGGCGuu-CUGGCGUCu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 49068 | 0.68 | 0.89229 |
Target: 5'- aGGUUcgcgaagcGGGCAcgcGCCGCGGGcCCGCuGAg -3' miRNA: 3'- cCCAA--------CUCGU---UGGCGUUCuGGCGuCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 44026 | 0.68 | 0.885349 |
Target: 5'- cGGc-GGGCGGCCGCcgcgcggcGGCCGCGGGc -3' miRNA: 3'- cCCaaCUCGUUGGCGuu------CUGGCGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 13114 | 0.68 | 0.885349 |
Target: 5'- gGGGgcGucGGCGGCCGCGGGGCgCGUg-- -3' miRNA: 3'- -CCCaaC--UCGUUGGCGUUCUG-GCGucu -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 98135 | 0.68 | 0.884642 |
Target: 5'- cGGcaccGGCGGCCgucggcgGCAAGGCCGCGGGc -3' miRNA: 3'- cCCaac-UCGUUGG-------CGUUCUGGCGUCU- -5' |
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23715 | 3' | -53.8 | NC_005261.1 | + | 32976 | 0.68 | 0.878175 |
Target: 5'- cGGGagagGAGgGACCGCGGaggagggggccGACCGgGGAa -3' miRNA: 3'- -CCCaa--CUCgUUGGCGUU-----------CUGGCgUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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