miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 17176 0.66 0.943748
Target:  5'- cGGGcgUGGGCAGCC-Cu--GCCGCGGc -3'
miRNA:   3'- -CCCa-ACUCGUUGGcGuucUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 119572 0.66 0.943748
Target:  5'- uGGaUGcgcuGCGAgCGCGAGACCGUGGc -3'
miRNA:   3'- cCCaACu---CGUUgGCGUUCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 95012 0.67 0.934051
Target:  5'- cGGGgcGGGCuauaaagccGCCGCcGGcggcgcucggcGCCGCAGAc -3'
miRNA:   3'- -CCCaaCUCGu--------UGGCGuUC-----------UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 78428 0.67 0.934051
Target:  5'- uGGGggGGGCGAUgGgGAGAagGCGGGg -3'
miRNA:   3'- -CCCaaCUCGUUGgCgUUCUggCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 5388 0.67 0.934051
Target:  5'- aGGGaggGAGgGAgaGCGAGAgCGCGGGc -3'
miRNA:   3'- -CCCaa-CUCgUUggCGUUCUgGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 83832 0.67 0.928829
Target:  5'- ----gGAGCAuCCGCuggcGGGCCGCGGc -3'
miRNA:   3'- cccaaCUCGUuGGCGu---UCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 70656 0.67 0.928829
Target:  5'- aGGUUcGGC-GCCGC--GGCCGCGGGc -3'
miRNA:   3'- cCCAAcUCGuUGGCGuuCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 33378 0.67 0.928829
Target:  5'- cGGGcugcGGGCcGCCGCAGccgccGCCGCAGc -3'
miRNA:   3'- -CCCaa--CUCGuUGGCGUUc----UGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 42680 0.67 0.928829
Target:  5'- cGGGccgccgccGGCAGCCGCGcGGCCGCcAGc -3'
miRNA:   3'- -CCCaac-----UCGUUGGCGUuCUGGCG-UCu -5'
23715 3' -53.8 NC_005261.1 + 74712 0.67 0.928829
Target:  5'- cGGGcgcggaaccGGGCcGCgGCAGcGGCCGCGGAc -3'
miRNA:   3'- -CCCaa-------CUCGuUGgCGUU-CUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 23455 0.67 0.928294
Target:  5'- aGGGcaGAaggcgccaggcccGCGGCgGCGAGugCGCGGGc -3'
miRNA:   3'- -CCCaaCU-------------CGUUGgCGUUCugGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 630 0.67 0.923359
Target:  5'- aGGGgaugUGgcGGCGGCCGCcAGcGCCGCGu- -3'
miRNA:   3'- -CCCa---AC--UCGUUGGCGuUC-UGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 28617 0.67 0.923359
Target:  5'- uGGcgGAGCuguGgCGCAugguGGCCGCGGGg -3'
miRNA:   3'- cCCaaCUCGu--UgGCGUu---CUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 110462 0.67 0.923359
Target:  5'- uGGGUgccUGGGCgGGCUGCucucguGGACCacGCAGGa -3'
miRNA:   3'- -CCCA---ACUCG-UUGGCGu-----UCUGG--CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 97175 0.67 0.923359
Target:  5'- uGGGUcgcGGGC-GCCgGCcGGGCCGCGGc -3'
miRNA:   3'- -CCCAa--CUCGuUGG-CGuUCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 2489 0.67 0.923359
Target:  5'- cGGGgaaGAGCGGgugguCCGCGAG-CCGCGc- -3'
miRNA:   3'- -CCCaa-CUCGUU-----GGCGUUCuGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 63472 0.67 0.922798
Target:  5'- aGGGUUgcacggcGAGCGGaaguaCGCAAGGuCCGCcGAg -3'
miRNA:   3'- -CCCAA-------CUCGUUg----GCGUUCU-GGCGuCU- -5'
23715 3' -53.8 NC_005261.1 + 30772 0.67 0.919956
Target:  5'- cGGGccgGAGCccGGCCGCGgcgguggaggugcugGGGCCGgAGGa -3'
miRNA:   3'- -CCCaa-CUCG--UUGGCGU---------------UCUGGCgUCU- -5'
23715 3' -53.8 NC_005261.1 + 107958 0.67 0.917638
Target:  5'- ---gUGcGCGGCCGCGGGGCCauGCAGu -3'
miRNA:   3'- cccaACuCGUUGGCGUUCUGG--CGUCu -5'
23715 3' -53.8 NC_005261.1 + 75571 0.67 0.917638
Target:  5'- cGGGgcgcUGGGCGGCgGCGcGgcgcucgcgcgcGCCGCGGAc -3'
miRNA:   3'- -CCCa---ACUCGUUGgCGUuC------------UGGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.