Results 21 - 40 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 26229 | 0.75 | 0.551066 |
Target: 5'- aGGG--GGGCAGCgGUgauAAGACCGCGGAu -3' miRNA: 3'- -CCCaaCUCGUUGgCG---UUCUGGCGUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 27351 | 0.74 | 0.561314 |
Target: 5'- aGGggGAGCGGCgccggaccggCGCGAGGCCGguGGg -3' miRNA: 3'- cCCaaCUCGUUG----------GCGUUCUGGCguCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 27471 | 0.66 | 0.948227 |
Target: 5'- cGGGgcGGGCAggcccuccccgGgCGCAccuGGACCGcCAGGu -3' miRNA: 3'- -CCCaaCUCGU-----------UgGCGU---UCUGGC-GUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 28266 | 0.68 | 0.89229 |
Target: 5'- cGGggGGGCGcuguugccGCCGCcgcGGCCGCGGu -3' miRNA: 3'- cCCaaCUCGU--------UGGCGuu-CUGGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 28617 | 0.67 | 0.923359 |
Target: 5'- uGGcgGAGCuguGgCGCAugguGGCCGCGGGg -3' miRNA: 3'- cCCaaCUCGu--UgGCGUu---CUGGCGUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 29032 | 0.66 | 0.952464 |
Target: 5'- aGGGUUGGGgAugacacggggGCCGCcgccGCCGCGGc -3' miRNA: 3'- -CCCAACUCgU----------UGGCGuuc-UGGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 29420 | 0.68 | 0.898992 |
Target: 5'- -----cGGCGGCCGCGGGGcCCGCGGc -3' miRNA: 3'- cccaacUCGUUGGCGUUCU-GGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 30772 | 0.67 | 0.919956 |
Target: 5'- cGGGccgGAGCccGGCCGCGgcgguggaggugcugGGGCCGgAGGa -3' miRNA: 3'- -CCCaa-CUCG--UUGGCGU---------------UCUGGCgUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 31472 | 0.7 | 0.79491 |
Target: 5'- cGGccUGAGUGGCCGCcGGugCGCGGc -3' miRNA: 3'- cCCa-ACUCGUUGGCGuUCugGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 32976 | 0.68 | 0.878175 |
Target: 5'- cGGGagagGAGgGACCGCGGaggagggggccGACCGgGGAa -3' miRNA: 3'- -CCCaa--CUCgUUGGCGUU-----------CUGGCgUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 33378 | 0.67 | 0.928829 |
Target: 5'- cGGGcugcGGGCcGCCGCAGccgccGCCGCAGc -3' miRNA: 3'- -CCCaa--CUCGuUGGCGUUc----UGGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 33810 | 0.69 | 0.838149 |
Target: 5'- cGGGcuugucuUUGGGCGGCCGgGGGG-CGCGGGc -3' miRNA: 3'- -CCC-------AACUCGUUGGCgUUCUgGCGUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 34341 | 0.71 | 0.756841 |
Target: 5'- aGGGgccgGGGCGGCCGaCGGGGCCGgGc- -3' miRNA: 3'- -CCCaa--CUCGUUGGC-GUUCUGGCgUcu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 40246 | 0.68 | 0.870771 |
Target: 5'- gGGGgccgUGAGCGccAUgGCGGcGGCCGCGGc -3' miRNA: 3'- -CCCa---ACUCGU--UGgCGUU-CUGGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 42680 | 0.67 | 0.928829 |
Target: 5'- cGGGccgccgccGGCAGCCGCGcGGCCGCcAGc -3' miRNA: 3'- -CCCaac-----UCGUUGGCGUuCUGGCG-UCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 43769 | 0.66 | 0.948227 |
Target: 5'- aGGUgcucgugGGGCGGCgCGCGgagGGcGCCGCGGGu -3' miRNA: 3'- cCCAa------CUCGUUG-GCGU---UC-UGGCGUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 44026 | 0.68 | 0.885349 |
Target: 5'- cGGc-GGGCGGCCGCcgcgcggcGGCCGCGGGc -3' miRNA: 3'- cCCaaCUCGUUGGCGuu------CUGGCGUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 44300 | 0.7 | 0.813063 |
Target: 5'- cGGGccaGGGCcgcugcCCGCGGGcGCCGCAGAc -3' miRNA: 3'- -CCCaa-CUCGuu----GGCGUUC-UGGCGUCU- -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 44766 | 0.71 | 0.727047 |
Target: 5'- cGGGagcgGAGCGggaGCCGCA--GCCGCAGc -3' miRNA: 3'- -CCCaa--CUCGU---UGGCGUucUGGCGUCu -5' |
|||||||
23715 | 3' | -53.8 | NC_005261.1 | + | 44866 | 0.75 | 0.510713 |
Target: 5'- aGGaaGAGCGccGCCGCGAGcGCCGCGGGg -3' miRNA: 3'- cCCaaCUCGU--UGGCGUUC-UGGCGUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home