miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 26229 0.75 0.551066
Target:  5'- aGGG--GGGCAGCgGUgauAAGACCGCGGAu -3'
miRNA:   3'- -CCCaaCUCGUUGgCG---UUCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 27351 0.74 0.561314
Target:  5'- aGGggGAGCGGCgccggaccggCGCGAGGCCGguGGg -3'
miRNA:   3'- cCCaaCUCGUUG----------GCGUUCUGGCguCU- -5'
23715 3' -53.8 NC_005261.1 + 27471 0.66 0.948227
Target:  5'- cGGGgcGGGCAggcccuccccgGgCGCAccuGGACCGcCAGGu -3'
miRNA:   3'- -CCCaaCUCGU-----------UgGCGU---UCUGGC-GUCU- -5'
23715 3' -53.8 NC_005261.1 + 28266 0.68 0.89229
Target:  5'- cGGggGGGCGcuguugccGCCGCcgcGGCCGCGGu -3'
miRNA:   3'- cCCaaCUCGU--------UGGCGuu-CUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 28617 0.67 0.923359
Target:  5'- uGGcgGAGCuguGgCGCAugguGGCCGCGGGg -3'
miRNA:   3'- cCCaaCUCGu--UgGCGUu---CUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 29032 0.66 0.952464
Target:  5'- aGGGUUGGGgAugacacggggGCCGCcgccGCCGCGGc -3'
miRNA:   3'- -CCCAACUCgU----------UGGCGuuc-UGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 29420 0.68 0.898992
Target:  5'- -----cGGCGGCCGCGGGGcCCGCGGc -3'
miRNA:   3'- cccaacUCGUUGGCGUUCU-GGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 30772 0.67 0.919956
Target:  5'- cGGGccgGAGCccGGCCGCGgcgguggaggugcugGGGCCGgAGGa -3'
miRNA:   3'- -CCCaa-CUCG--UUGGCGU---------------UCUGGCgUCU- -5'
23715 3' -53.8 NC_005261.1 + 31472 0.7 0.79491
Target:  5'- cGGccUGAGUGGCCGCcGGugCGCGGc -3'
miRNA:   3'- cCCa-ACUCGUUGGCGuUCugGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 32976 0.68 0.878175
Target:  5'- cGGGagagGAGgGACCGCGGaggagggggccGACCGgGGAa -3'
miRNA:   3'- -CCCaa--CUCgUUGGCGUU-----------CUGGCgUCU- -5'
23715 3' -53.8 NC_005261.1 + 33378 0.67 0.928829
Target:  5'- cGGGcugcGGGCcGCCGCAGccgccGCCGCAGc -3'
miRNA:   3'- -CCCaa--CUCGuUGGCGUUc----UGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 33810 0.69 0.838149
Target:  5'- cGGGcuugucuUUGGGCGGCCGgGGGG-CGCGGGc -3'
miRNA:   3'- -CCC-------AACUCGUUGGCgUUCUgGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 34341 0.71 0.756841
Target:  5'- aGGGgccgGGGCGGCCGaCGGGGCCGgGc- -3'
miRNA:   3'- -CCCaa--CUCGUUGGC-GUUCUGGCgUcu -5'
23715 3' -53.8 NC_005261.1 + 40246 0.68 0.870771
Target:  5'- gGGGgccgUGAGCGccAUgGCGGcGGCCGCGGc -3'
miRNA:   3'- -CCCa---ACUCGU--UGgCGUU-CUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 42680 0.67 0.928829
Target:  5'- cGGGccgccgccGGCAGCCGCGcGGCCGCcAGc -3'
miRNA:   3'- -CCCaac-----UCGUUGGCGUuCUGGCG-UCu -5'
23715 3' -53.8 NC_005261.1 + 43769 0.66 0.948227
Target:  5'- aGGUgcucgugGGGCGGCgCGCGgagGGcGCCGCGGGu -3'
miRNA:   3'- cCCAa------CUCGUUG-GCGU---UC-UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 44026 0.68 0.885349
Target:  5'- cGGc-GGGCGGCCGCcgcgcggcGGCCGCGGGc -3'
miRNA:   3'- cCCaaCUCGUUGGCGuu------CUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 44300 0.7 0.813063
Target:  5'- cGGGccaGGGCcgcugcCCGCGGGcGCCGCAGAc -3'
miRNA:   3'- -CCCaa-CUCGuu----GGCGUUC-UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 44766 0.71 0.727047
Target:  5'- cGGGagcgGAGCGggaGCCGCA--GCCGCAGc -3'
miRNA:   3'- -CCCaa--CUCGU---UGGCGUucUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 44866 0.75 0.510713
Target:  5'- aGGaaGAGCGccGCCGCGAGcGCCGCGGGg -3'
miRNA:   3'- cCCaaCUCGU--UGGCGUUC-UGGCGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.