miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 450 0.68 0.905453
Target:  5'- cGGGgacGGgGGCCGCGAcGGCCgGCGGGa -3'
miRNA:   3'- -CCCaacUCgUUGGCGUU-CUGG-CGUCU- -5'
23715 3' -53.8 NC_005261.1 + 630 0.67 0.923359
Target:  5'- aGGGgaugUGgcGGCGGCCGCcAGcGCCGCGu- -3'
miRNA:   3'- -CCCa---AC--UCGUUGGCGuUC-UGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 1398 0.68 0.905453
Target:  5'- cGGGcgccGCGGCCGCGGcGGCgGCGGGg -3'
miRNA:   3'- -CCCaacuCGUUGGCGUU-CUGgCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 2489 0.67 0.923359
Target:  5'- cGGGgaaGAGCGGgugguCCGCGAG-CCGCGc- -3'
miRNA:   3'- -CCCaa-CUCGUU-----GGCGUUCuGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 3663 0.66 0.956461
Target:  5'- ----gGAGCGcagGCCGCGgccggcAGGCCGCGGc -3'
miRNA:   3'- cccaaCUCGU---UGGCGU------UCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 3938 0.71 0.747011
Target:  5'- cGGGUaggccaUGGGCGcguacgcgcGCCGCAGGcuCUGCAGGa -3'
miRNA:   3'- -CCCA------ACUCGU---------UGGCGUUCu-GGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 5388 0.67 0.934051
Target:  5'- aGGGaggGAGgGAgaGCGAGAgCGCGGGc -3'
miRNA:   3'- -CCCaa-CUCgUUggCGUUCUgGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 5506 0.71 0.766555
Target:  5'- uGGGgccgcgGcAGCGGCgGCGAGGCCGCcGGc -3'
miRNA:   3'- -CCCaa----C-UCGUUGgCGUUCUGGCGuCU- -5'
23715 3' -53.8 NC_005261.1 + 11880 0.66 0.956072
Target:  5'- cGGGgcGAGCccgcCCGCAcGcgcgcccGCCGCGGGc -3'
miRNA:   3'- -CCCaaCUCGuu--GGCGUuC-------UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 13114 0.68 0.885349
Target:  5'- gGGGgcGucGGCGGCCGCGGGGCgCGUg-- -3'
miRNA:   3'- -CCCaaC--UCGUUGGCGUUCUG-GCGucu -5'
23715 3' -53.8 NC_005261.1 + 14040 0.7 0.804068
Target:  5'- cGGGgccaugcGAGCGGuCCGCAggcAGGCCGCGu- -3'
miRNA:   3'- -CCCaa-----CUCGUU-GGCGU---UCUGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 14963 0.7 0.804068
Target:  5'- cGGGcgugccugGGGCGACUGCGcGGCCGCGc- -3'
miRNA:   3'- -CCCaa------CUCGUUGGCGUuCUGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 17176 0.66 0.943748
Target:  5'- cGGGcgUGGGCAGCC-Cu--GCCGCGGc -3'
miRNA:   3'- -CCCa-ACUCGUUGGcGuucUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 17640 0.66 0.952464
Target:  5'- -----aAGCGAUCGCGAGGCCGaugaGGAu -3'
miRNA:   3'- cccaacUCGUUGGCGUUCUGGCg---UCU- -5'
23715 3' -53.8 NC_005261.1 + 18126 0.73 0.665414
Target:  5'- cGGGggGaAGCAGCCGCA-GGCC-CAGu -3'
miRNA:   3'- -CCCaaC-UCGUUGGCGUuCUGGcGUCu -5'
23715 3' -53.8 NC_005261.1 + 19955 0.67 0.911669
Target:  5'- gGGGUgGGGCGGCCucggcugcgGCAGcGACCGCc-- -3'
miRNA:   3'- -CCCAaCUCGUUGG---------CGUU-CUGGCGucu -5'
23715 3' -53.8 NC_005261.1 + 21773 0.69 0.847245
Target:  5'- cGGgcGAGCcGCCGCGgcgcGGGCCGCc-- -3'
miRNA:   3'- cCCaaCUCGuUGGCGU----UCUGGCGucu -5'
23715 3' -53.8 NC_005261.1 + 23183 0.72 0.696484
Target:  5'- gGGGgcgacagcGAGCGcGCCGCGGGGcCCGCAGc -3'
miRNA:   3'- -CCCaa------CUCGU-UGGCGUUCU-GGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 23455 0.67 0.928294
Target:  5'- aGGGcaGAaggcgccaggcccGCGGCgGCGAGugCGCGGGc -3'
miRNA:   3'- -CCCaaCU-------------CGUUGgCGUUCugGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 23528 0.66 0.943748
Target:  5'- cGGUcGGGCgAGCgGCAgAGGCgGCAGGa -3'
miRNA:   3'- cCCAaCUCG-UUGgCGU-UCUGgCGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.