miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 56155 0.77 0.443359
Target:  5'- aGGGUggcGGCAGCgGCGGGGcCCGCGGGg -3'
miRNA:   3'- -CCCAac-UCGUUGgCGUUCU-GGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 44866 0.75 0.510713
Target:  5'- aGGaaGAGCGccGCCGCGAGcGCCGCGGGg -3'
miRNA:   3'- cCCaaCUCGU--UGGCGUUC-UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 134912 0.75 0.510713
Target:  5'- cGGGUgc-GCAAgCGCAagcuggAGACCGCGGAg -3'
miRNA:   3'- -CCCAacuCGUUgGCGU------UCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 119539 0.75 0.529741
Target:  5'- cGGccGAGCAaggccccGCCGCGGGGCCGCAa- -3'
miRNA:   3'- cCCaaCUCGU-------UGGCGUUCUGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 92472 0.75 0.53075
Target:  5'- cGGaUGAGCGgcACCGCGAGcUCGCGGAc -3'
miRNA:   3'- cCCaACUCGU--UGGCGUUCuGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 98042 0.75 0.550045
Target:  5'- cGGUacUG-GCGGCCGCGggcggcgGGACCGCGGGc -3'
miRNA:   3'- cCCA--ACuCGUUGGCGU-------UCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 26229 0.75 0.551066
Target:  5'- aGGG--GGGCAGCgGUgauAAGACCGCGGAu -3'
miRNA:   3'- -CCCaaCUCGUUGgCG---UUCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 27351 0.74 0.561314
Target:  5'- aGGggGAGCGGCgccggaccggCGCGAGGCCGguGGg -3'
miRNA:   3'- cCCaaCUCGUUG----------GCGUUCUGGCguCU- -5'
23715 3' -53.8 NC_005261.1 + 65399 0.74 0.571613
Target:  5'- cGGGUUGGGCGGCCccgGCAGcuccacGuCCGCGGGc -3'
miRNA:   3'- -CCCAACUCGUUGG---CGUU------CuGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 68564 0.74 0.571613
Target:  5'- cGGGcucuUUGAGCGcgucGCCGCcgaggcGGGCCGCGGGa -3'
miRNA:   3'- -CCC----AACUCGU----UGGCGu-----UCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 97635 0.73 0.63409
Target:  5'- cGGGcgGAGCGGgCGCGGGuGCCGCAc- -3'
miRNA:   3'- -CCCaaCUCGUUgGCGUUC-UGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 18126 0.73 0.665414
Target:  5'- cGGGggGaAGCAGCCGCA-GGCC-CAGu -3'
miRNA:   3'- -CCCaaC-UCGUUGGCGUuCUGGcGUCu -5'
23715 3' -53.8 NC_005261.1 + 71969 0.73 0.665414
Target:  5'- cGGGgcgcgGAGCGcGCgGCAGGugCGCAGc -3'
miRNA:   3'- -CCCaa---CUCGU-UGgCGUUCugGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 102954 0.72 0.675811
Target:  5'- cGGc--GGCGGCCGCGGGcGCCGCGGGc -3'
miRNA:   3'- cCCaacUCGUUGGCGUUC-UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 121188 0.72 0.686171
Target:  5'- cGGGgccgGGGCcgGGCC-CGGGGCCGCGGGc -3'
miRNA:   3'- -CCCaa--CUCG--UUGGcGUUCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 23183 0.72 0.696484
Target:  5'- gGGGgcgacagcGAGCGcGCCGCGGGGcCCGCAGc -3'
miRNA:   3'- -CCCaa------CUCGU-UGGCGUUCU-GGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 74287 0.72 0.706741
Target:  5'- cGGGcgGGGCGgucGCCGCcGGGCaGCAGAc -3'
miRNA:   3'- -CCCaaCUCGU---UGGCGuUCUGgCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 44766 0.71 0.727047
Target:  5'- cGGGagcgGAGCGggaGCCGCA--GCCGCAGc -3'
miRNA:   3'- -CCCaa--CUCGU---UGGCGUucUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 63722 0.71 0.747011
Target:  5'- aGGUccgUGAGCGGCgugCGCAuGGCCGCGGc -3'
miRNA:   3'- cCCA---ACUCGUUG---GCGUuCUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 3938 0.71 0.747011
Target:  5'- cGGGUaggccaUGGGCGcguacgcgcGCCGCAGGcuCUGCAGGa -3'
miRNA:   3'- -CCCA------ACUCGU---------UGGCGUUCu-GGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.