miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 3' -53.8 NC_005261.1 + 3938 0.71 0.747011
Target:  5'- cGGGUaggccaUGGGCGcguacgcgcGCCGCAGGcuCUGCAGGa -3'
miRNA:   3'- -CCCA------ACUCGU---------UGGCGUUCu-GGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 118393 0.71 0.756841
Target:  5'- aGGcGcUG-GCGGCCGCGGGcGCCGCAGc -3'
miRNA:   3'- -CC-CaACuCGUUGGCGUUC-UGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 34341 0.71 0.756841
Target:  5'- aGGGgccgGGGCGGCCGaCGGGGCCGgGc- -3'
miRNA:   3'- -CCCaa--CUCGUUGGC-GUUCUGGCgUcu -5'
23715 3' -53.8 NC_005261.1 + 5506 0.71 0.766555
Target:  5'- uGGGgccgcgGcAGCGGCgGCGAGGCCGCcGGc -3'
miRNA:   3'- -CCCaa----C-UCGUUGgCGUUCUGGCGuCU- -5'
23715 3' -53.8 NC_005261.1 + 114558 0.71 0.766555
Target:  5'- cGGcGggGAGCGGCCGCcgccGGAUCGCGu- -3'
miRNA:   3'- -CC-CaaCUCGUUGGCGu---UCUGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 57634 0.7 0.792133
Target:  5'- cGGGUggcucAGCAGCCGCccgagcacgcccccGAGACUGCGcGAg -3'
miRNA:   3'- -CCCAac---UCGUUGGCG--------------UUCUGGCGU-CU- -5'
23715 3' -53.8 NC_005261.1 + 31472 0.7 0.79491
Target:  5'- cGGccUGAGUGGCCGCcGGugCGCGGc -3'
miRNA:   3'- cCCa-ACUCGUUGGCGuUCugGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 72757 0.7 0.79491
Target:  5'- cGGGccGcaugcccagcacGGCGGCCGCGcacgcguccgGGGCCGCGGAc -3'
miRNA:   3'- -CCCaaC------------UCGUUGGCGU----------UCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 131966 0.7 0.79491
Target:  5'- cGGGUgGAGCuGCCGCGcGGCCacCAGGc -3'
miRNA:   3'- -CCCAaCUCGuUGGCGUuCUGGc-GUCU- -5'
23715 3' -53.8 NC_005261.1 + 75238 0.7 0.798592
Target:  5'- cGGGcgcauguacgUGGGCAACCGCGcguacucggccuucgAGugCGCGGu -3'
miRNA:   3'- -CCCa---------ACUCGUUGGCGU---------------UCugGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 14040 0.7 0.804068
Target:  5'- cGGGgccaugcGAGCGGuCCGCAggcAGGCCGCGu- -3'
miRNA:   3'- -CCCaa-----CUCGUU-GGCGU---UCUGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 14963 0.7 0.804068
Target:  5'- cGGGcgugccugGGGCGACUGCGcGGCCGCGc- -3'
miRNA:   3'- -CCCaa------CUCGUUGGCGUuCUGGCGUcu -5'
23715 3' -53.8 NC_005261.1 + 83884 0.7 0.812171
Target:  5'- cGGGUcagcucUGAGCGcgggGCCGCcgggcucGGGACCGaCGGGg -3'
miRNA:   3'- -CCCA------ACUCGU----UGGCG-------UUCUGGC-GUCU- -5'
23715 3' -53.8 NC_005261.1 + 44300 0.7 0.813063
Target:  5'- cGGGccaGGGCcgcugcCCGCGGGcGCCGCAGAc -3'
miRNA:   3'- -CCCaa-CUCGuu----GGCGUUC-UGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 59038 0.7 0.813063
Target:  5'- cGGGUgccgccgcgcGAGCucAGCgCGCGcGGCCGCGGAg -3'
miRNA:   3'- -CCCAa---------CUCG--UUG-GCGUuCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 118171 0.7 0.821887
Target:  5'- cGGcgGGGCuuGCCGUcuGGGCCGCGGGc -3'
miRNA:   3'- cCCaaCUCGu-UGGCGu-UCUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 110317 0.69 0.83053
Target:  5'- -aGUacGGCAACCGCGccGCCGCGGAc -3'
miRNA:   3'- ccCAacUCGUUGGCGUucUGGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 123419 0.69 0.83053
Target:  5'- aGGGgcGGGCucgccacgGGCCGCA--GCCGCAGc -3'
miRNA:   3'- -CCCaaCUCG--------UUGGCGUucUGGCGUCu -5'
23715 3' -53.8 NC_005261.1 + 33810 0.69 0.838149
Target:  5'- cGGGcuugucuUUGGGCGGCCGgGGGG-CGCGGGc -3'
miRNA:   3'- -CCC-------AACUCGUUGGCgUUCUgGCGUCU- -5'
23715 3' -53.8 NC_005261.1 + 54838 0.69 0.838986
Target:  5'- cGGGcaGGGCuAGCUGCcGGcGCCGCAGGc -3'
miRNA:   3'- -CCCaaCUCG-UUGGCGuUC-UGGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.