miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 74055 0.76 0.584966
Target:  5'- cGGggGGCUGCGgcagCUGCGCga--CGCg -3'
miRNA:   3'- -CCuuCCGAUGCaa--GACGUGgaagGCG- -5'
23723 3' -52.1 NC_005261.1 + 97058 0.74 0.67943
Target:  5'- cGGggGGCgGCGg---GCACgaUCCGCg -3'
miRNA:   3'- -CCuuCCGaUGCaagaCGUGgaAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 104580 0.74 0.710504
Target:  5'- uGAGGGCUGCGcgC-GCAUCgccUCCGCc -3'
miRNA:   3'- cCUUCCGAUGCaaGaCGUGGa--AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 63141 0.73 0.764657
Target:  5'- cGGggGGCUGCuugaaCUGCAgCUccguguccgacgugcUCCGCg -3'
miRNA:   3'- -CCuuCCGAUGcaa--GACGUgGA---------------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 96858 0.72 0.80252
Target:  5'- cGGggGGCUcggggggcgcggguaGCGUgcggaUCcGCGCCUcggcgUCCGCc -3'
miRNA:   3'- -CCuuCCGA---------------UGCA-----AGaCGUGGA-----AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 88325 0.71 0.859035
Target:  5'- gGGGAGGCUGCaaggCUggcgGCGCCccgCCGCc -3'
miRNA:   3'- -CCUUCCGAUGcaa-GA----CGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 134407 0.71 0.866827
Target:  5'- aGGAAGGUgUGCGUgaaCUGCugCUcCaCGCu -3'
miRNA:   3'- -CCUUCCG-AUGCAa--GACGugGAaG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 91539 0.7 0.881736
Target:  5'- aGGAcccGGGCUACGcgC-GCGCCcgcgCCGUg -3'
miRNA:   3'- -CCU---UCCGAUGCaaGaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 90440 0.7 0.895707
Target:  5'- gGGcGGGC-GCGcgCUGCACUUUgUGCg -3'
miRNA:   3'- -CCuUCCGaUGCaaGACGUGGAAgGCG- -5'
23723 3' -52.1 NC_005261.1 + 20562 0.7 0.90233
Target:  5'- cGGcGGGCUGCGcagCgGCGCCggCgGCg -3'
miRNA:   3'- -CCuUCCGAUGCaa-GaCGUGGaaGgCG- -5'
23723 3' -52.1 NC_005261.1 + 99564 0.69 0.908706
Target:  5'- aGGAAGGCguCGUagcUCUGgGCCUg-CGCg -3'
miRNA:   3'- -CCUUCCGauGCA---AGACgUGGAagGCG- -5'
23723 3' -52.1 NC_005261.1 + 110258 0.69 0.909331
Target:  5'- cGGggGGCUGCGggccucccucguggcCUuuuccuuccuggcggGCGCCUgcgCCGCc -3'
miRNA:   3'- -CCuuCCGAUGCaa-------------GA---------------CGUGGAa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 32108 0.69 0.92071
Target:  5'- cGGAGGGCgagGCGgcCaGcCACCgcgCCGCc -3'
miRNA:   3'- -CCUUCCGa--UGCaaGaC-GUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 53321 0.69 0.926333
Target:  5'- aGGAGGCcgcaggugUGCGccUCUGCGCCcgcccccgCCGCg -3'
miRNA:   3'- cCUUCCG--------AUGCa-AGACGUGGaa------GGCG- -5'
23723 3' -52.1 NC_005261.1 + 93913 0.69 0.926333
Target:  5'- cGGGcgcGGCgcccGCGggCuUGCGCCgUCCGCg -3'
miRNA:   3'- -CCUu--CCGa---UGCaaG-ACGUGGaAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 60175 0.69 0.93065
Target:  5'- uGGAAGcGCg----UCUGCGCCgcggcggagaagUCCGCg -3'
miRNA:   3'- -CCUUC-CGaugcaAGACGUGGa-----------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 100810 0.69 0.931704
Target:  5'- cGGAAGGgcGCGU---GCGCCUgcgCCGCc -3'
miRNA:   3'- -CCUUCCgaUGCAagaCGUGGAa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 36603 0.69 0.931704
Target:  5'- gGGggGGCaGCGcucCUGCGCCccggCGCa -3'
miRNA:   3'- -CCuuCCGaUGCaa-GACGUGGaag-GCG- -5'
23723 3' -52.1 NC_005261.1 + 30702 0.68 0.936822
Target:  5'- gGGGAGGCccGCGggagCcccgGCGCCgggCCGCc -3'
miRNA:   3'- -CCUUCCGa-UGCaa--Ga---CGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 106863 0.68 0.940255
Target:  5'- uGGggGGCggGCGUccgcggccucgcacUCcugcaGCGCCUgcgucgUCCGCg -3'
miRNA:   3'- -CCuuCCGa-UGCA--------------AGa----CGUGGA------AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.