miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 107726 0.68 0.941688
Target:  5'- cGGcAGGCgg----CUGCGCCUcggCCGCg -3'
miRNA:   3'- -CCuUCCGaugcaaGACGUGGAa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 116932 0.68 0.941688
Target:  5'- --cGGGCUGCug---GaCGCCUUCCGCg -3'
miRNA:   3'- ccuUCCGAUGcaagaC-GUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 82180 0.68 0.950248
Target:  5'- cGGAAGGCgcgGCGUgcgcagaagccguUgUGCACCgccaCGUa -3'
miRNA:   3'- -CCUUCCGa--UGCA-------------AgACGUGGaag-GCG- -5'
23723 3' -52.1 NC_005261.1 + 117549 0.68 0.953587
Target:  5'- cGGAgGGGCUGaccgUGUUCUuuuucugccgccccGCGCCcgCCGCu -3'
miRNA:   3'- -CCU-UCCGAU----GCAAGA--------------CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 53523 0.67 0.958307
Target:  5'- cGAAGGCUGuggcugcCGUgUUGCGCuCUUCgGCc -3'
miRNA:   3'- cCUUCCGAU-------GCAaGACGUG-GAAGgCG- -5'
23723 3' -52.1 NC_005261.1 + 137992 0.67 0.958685
Target:  5'- cGgcGGCUGCGgcggcggCUGCGgCggcCCGCa -3'
miRNA:   3'- cCuuCCGAUGCaa-----GACGUgGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 321 0.67 0.958685
Target:  5'- cGgcGGCUGCGgcggcggCUGCGgCggcCCGCa -3'
miRNA:   3'- cCuuCCGAUGCaa-----GACGUgGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 61873 0.67 0.962334
Target:  5'- aGAGGGCaccACGauggGCGCCUUCuCGCc -3'
miRNA:   3'- cCUUCCGa--UGCaagaCGUGGAAG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 97842 0.67 0.962334
Target:  5'- cGggGGCgGCGg---GCGCCg-CCGCg -3'
miRNA:   3'- cCuuCCGaUGCaagaCGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97487 0.67 0.962334
Target:  5'- gGGggGGCccUugGgg--GCGCCggggCCGCc -3'
miRNA:   3'- -CCuuCCG--AugCaagaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 116392 0.67 0.962334
Target:  5'- cGGggGGCcGCGUgcacGCGCac-CCGCu -3'
miRNA:   3'- -CCuuCCGaUGCAaga-CGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 32201 0.67 0.964752
Target:  5'- uGGAGcuGGCgcccgACGagCUGCcggccgcggcggugGCCUUCUGCg -3'
miRNA:   3'- -CCUU--CCGa----UGCaaGACG--------------UGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 43808 0.67 0.965754
Target:  5'- aGggGGCgcCGggC-GCGCCcUCCGUg -3'
miRNA:   3'- cCuuCCGauGCaaGaCGUGGaAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 45415 0.67 0.965754
Target:  5'- ----uGCUGCGgcgcCUGCGCCcgCCGCc -3'
miRNA:   3'- ccuucCGAUGCaa--GACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 111615 0.67 0.965754
Target:  5'- cGGcuGGGCUGCGgcgCcGUGCCgccgCCGCc -3'
miRNA:   3'- -CCu-UCCGAUGCaa-GaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 87897 0.67 0.968948
Target:  5'- aGAGGGCgggccggGCGUaccgugugUCUGCcgccacccgggGCCUggagCCGCg -3'
miRNA:   3'- cCUUCCGa------UGCA--------AGACG-----------UGGAa---GGCG- -5'
23723 3' -52.1 NC_005261.1 + 3832 0.67 0.968948
Target:  5'- cGGGcccGGGCgcugGCGgcagCgGCGCCggcgCCGCg -3'
miRNA:   3'- -CCU---UCCGa---UGCaa--GaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 85546 0.67 0.968948
Target:  5'- cGGgcGGCUcCG-UCUGCGgCg-CCGCg -3'
miRNA:   3'- -CCuuCCGAuGCaAGACGUgGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97639 0.67 0.971925
Target:  5'- cGGAgcGGGC-GCGggugCcGCACCUggggggccggcgUCCGCg -3'
miRNA:   3'- -CCU--UCCGaUGCaa--GaCGUGGA------------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 124250 0.67 0.971925
Target:  5'- cGGGcAGGCgcCGcgCgGCGCCgcCCGCg -3'
miRNA:   3'- -CCU-UCCGauGCaaGaCGUGGaaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.