miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 61873 0.67 0.962334
Target:  5'- aGAGGGCaccACGauggGCGCCUUCuCGCc -3'
miRNA:   3'- cCUUCCGa--UGCaagaCGUGGAAG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 97842 0.67 0.962334
Target:  5'- cGggGGCgGCGg---GCGCCg-CCGCg -3'
miRNA:   3'- cCuuCCGaUGCaagaCGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97487 0.67 0.962334
Target:  5'- gGGggGGCccUugGgg--GCGCCggggCCGCc -3'
miRNA:   3'- -CCuuCCG--AugCaagaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 321 0.67 0.958685
Target:  5'- cGgcGGCUGCGgcggcggCUGCGgCggcCCGCa -3'
miRNA:   3'- cCuuCCGAUGCaa-----GACGUgGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 137992 0.67 0.958685
Target:  5'- cGgcGGCUGCGgcggcggCUGCGgCggcCCGCa -3'
miRNA:   3'- cCuuCCGAUGCaa-----GACGUgGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 53523 0.67 0.958307
Target:  5'- cGAAGGCUGuggcugcCGUgUUGCGCuCUUCgGCc -3'
miRNA:   3'- cCUUCCGAU-------GCAaGACGUG-GAAGgCG- -5'
23723 3' -52.1 NC_005261.1 + 117549 0.68 0.953587
Target:  5'- cGGAgGGGCUGaccgUGUUCUuuuucugccgccccGCGCCcgCCGCu -3'
miRNA:   3'- -CCU-UCCGAU----GCAAGA--------------CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 82180 0.68 0.950248
Target:  5'- cGGAAGGCgcgGCGUgcgcagaagccguUgUGCACCgccaCGUa -3'
miRNA:   3'- -CCUUCCGa--UGCA-------------AgACGUGGaag-GCG- -5'
23723 3' -52.1 NC_005261.1 + 107726 0.68 0.941688
Target:  5'- cGGcAGGCgg----CUGCGCCUcggCCGCg -3'
miRNA:   3'- -CCuUCCGaugcaaGACGUGGAa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 116932 0.68 0.941688
Target:  5'- --cGGGCUGCug---GaCGCCUUCCGCg -3'
miRNA:   3'- ccuUCCGAUGcaagaC-GUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 106863 0.68 0.940255
Target:  5'- uGGggGGCggGCGUccgcggccucgcacUCcugcaGCGCCUgcgucgUCCGCg -3'
miRNA:   3'- -CCuuCCGa-UGCA--------------AGa----CGUGGA------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 30702 0.68 0.936822
Target:  5'- gGGGAGGCccGCGggagCcccgGCGCCgggCCGCc -3'
miRNA:   3'- -CCUUCCGa-UGCaa--Ga---CGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 36603 0.69 0.931704
Target:  5'- gGGggGGCaGCGcucCUGCGCCccggCGCa -3'
miRNA:   3'- -CCuuCCGaUGCaa-GACGUGGaag-GCG- -5'
23723 3' -52.1 NC_005261.1 + 100810 0.69 0.931704
Target:  5'- cGGAAGGgcGCGU---GCGCCUgcgCCGCc -3'
miRNA:   3'- -CCUUCCgaUGCAagaCGUGGAa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 60175 0.69 0.93065
Target:  5'- uGGAAGcGCg----UCUGCGCCgcggcggagaagUCCGCg -3'
miRNA:   3'- -CCUUC-CGaugcaAGACGUGGa-----------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 53321 0.69 0.926333
Target:  5'- aGGAGGCcgcaggugUGCGccUCUGCGCCcgcccccgCCGCg -3'
miRNA:   3'- cCUUCCG--------AUGCa-AGACGUGGaa------GGCG- -5'
23723 3' -52.1 NC_005261.1 + 93913 0.69 0.926333
Target:  5'- cGGGcgcGGCgcccGCGggCuUGCGCCgUCCGCg -3'
miRNA:   3'- -CCUu--CCGa---UGCaaG-ACGUGGaAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 32108 0.69 0.92071
Target:  5'- cGGAGGGCgagGCGgcCaGcCACCgcgCCGCc -3'
miRNA:   3'- -CCUUCCGa--UGCaaGaC-GUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 110258 0.69 0.909331
Target:  5'- cGGggGGCUGCGggccucccucguggcCUuuuccuuccuggcggGCGCCUgcgCCGCc -3'
miRNA:   3'- -CCuuCCGAUGCaa-------------GA---------------CGUGGAa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 99564 0.69 0.908706
Target:  5'- aGGAAGGCguCGUagcUCUGgGCCUg-CGCg -3'
miRNA:   3'- -CCUUCCGauGCA---AGACgUGGAagGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.