miRNA display CGI


Results 1 - 20 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 5' -62 NC_005261.1 + 91452 0.66 0.647911
Target:  5'- uGCGCGGcacGGCcccgcccgcgccucCCAGCGGCgCCGCc -3'
miRNA:   3'- -CGCGCCuu-CCGca------------GGUCGUCG-GGCGc -5'
23723 5' -62 NC_005261.1 + 107150 0.66 0.646924
Target:  5'- cCGCGGccaugGAGGCGgCCAGC-GCCUccgucucgGCGg -3'
miRNA:   3'- cGCGCC-----UUCCGCaGGUCGuCGGG--------CGC- -5'
23723 5' -62 NC_005261.1 + 102798 0.66 0.646924
Target:  5'- cCGCGaGcgcGGCGcCCAGCcGCCgCGCGc -3'
miRNA:   3'- cGCGC-Cuu-CCGCaGGUCGuCGG-GCGC- -5'
23723 5' -62 NC_005261.1 + 84276 0.66 0.646924
Target:  5'- gGCGC---AGGUGccgCCGGCGGCCC-CGg -3'
miRNA:   3'- -CGCGccuUCCGCa--GGUCGUCGGGcGC- -5'
23723 5' -62 NC_005261.1 + 68958 0.66 0.646924
Target:  5'- cGCGCGGGgaccuGGuGCGcgCCAccGCGGCCCuuuucgggccgcGCGg -3'
miRNA:   3'- -CGCGCCU-----UC-CGCa-GGU--CGUCGGG------------CGC- -5'
23723 5' -62 NC_005261.1 + 100858 0.66 0.646924
Target:  5'- uGCGCGucGAAGGcCG-CCAGaAGCgCGCGc -3'
miRNA:   3'- -CGCGC--CUUCC-GCaGGUCgUCGgGCGC- -5'
23723 5' -62 NC_005261.1 + 114296 0.66 0.646924
Target:  5'- aCGUGGAGGacgccuugaGCGacCCGGCAGUCCgGCGc -3'
miRNA:   3'- cGCGCCUUC---------CGCa-GGUCGUCGGG-CGC- -5'
23723 5' -62 NC_005261.1 + 99088 0.66 0.646924
Target:  5'- aGgGCGGcgcGGCG-CgCAGCGGCuuGCu -3'
miRNA:   3'- -CgCGCCuu-CCGCaG-GUCGUCGggCGc -5'
23723 5' -62 NC_005261.1 + 120651 0.66 0.646924
Target:  5'- cUGCGGcgcAAGGCG-CgGGCGcGCCUGUGa -3'
miRNA:   3'- cGCGCC---UUCCGCaGgUCGU-CGGGCGC- -5'
23723 5' -62 NC_005261.1 + 103650 0.66 0.646924
Target:  5'- -aGCGGGccaugcuaGCcUCCAGCGacGCCCGCGa -3'
miRNA:   3'- cgCGCCUuc------CGcAGGUCGU--CGGGCGC- -5'
23723 5' -62 NC_005261.1 + 93502 0.66 0.646924
Target:  5'- aGCGCGcGAAccgcGGCGcCguGUuggccgcgaggaAGCCCGCGc -3'
miRNA:   3'- -CGCGC-CUU----CCGCaGguCG------------UCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 72939 0.66 0.646924
Target:  5'- cGCGCaGcGccGGCG-CCGGCaccGGCUCGCGc -3'
miRNA:   3'- -CGCG-C-CuuCCGCaGGUCG---UCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 126585 0.66 0.646924
Target:  5'- cGCGCGGcAGuaGcCCAaaaacaGGCCCGCGu -3'
miRNA:   3'- -CGCGCCuUCcgCaGGUcg----UCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 48453 0.66 0.646924
Target:  5'- gGCGCGGccGGCGcggucaacgCCGGCcgAGUCCaGCa -3'
miRNA:   3'- -CGCGCCuuCCGCa--------GGUCG--UCGGG-CGc -5'
23723 5' -62 NC_005261.1 + 30126 0.66 0.643964
Target:  5'- gGCGCGGcccgcgacgcggugGAGcGCGcgcgCCuuAGCGGCgCCGCGc -3'
miRNA:   3'- -CGCGCC--------------UUC-CGCa---GG--UCGUCG-GGCGC- -5'
23723 5' -62 NC_005261.1 + 55803 0.66 0.642978
Target:  5'- cGCGCGGccuucgccgccguaAAGGCGUguauaaaggCCGGgucguccCGGUCCGCGc -3'
miRNA:   3'- -CGCGCC--------------UUCCGCA---------GGUC-------GUCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 38660 0.66 0.637055
Target:  5'- -aGCGGcGGGUG-CgGGCccgGGCCCGCc -3'
miRNA:   3'- cgCGCCuUCCGCaGgUCG---UCGGGCGc -5'
23723 5' -62 NC_005261.1 + 2945 0.66 0.637055
Target:  5'- cCGCGGccGGGC-UCCGGCccggacuagGGCCCGgGc -3'
miRNA:   3'- cGCGCCu-UCCGcAGGUCG---------UCGGGCgC- -5'
23723 5' -62 NC_005261.1 + 35099 0.66 0.637055
Target:  5'- cCGCGGugagcGGCGagccccCCAGCcGCCgGCGg -3'
miRNA:   3'- cGCGCCuu---CCGCa-----GGUCGuCGGgCGC- -5'
23723 5' -62 NC_005261.1 + 108523 0.66 0.637055
Target:  5'- cGCGCacGAAGGgGUCuCGGUAGgCCaGCGc -3'
miRNA:   3'- -CGCGc-CUUCCgCAG-GUCGUCgGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.