miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 39737 0.74 0.578972
Target:  5'- gCG-GGUG-CCCCAGUCGCgGaucUCGGCCu -3'
miRNA:   3'- -GCaCUACuGGGGUUAGCGgC---AGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 39772 0.72 0.731016
Target:  5'- --gGAUGGCCUCGaggacGUCGCCGgggggcggcgCGGCCg -3'
miRNA:   3'- gcaCUACUGGGGU-----UAGCGGCa---------GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 40027 0.69 0.871195
Target:  5'- -----gGGCCCgCAGUCGaCCG-CGACCa -3'
miRNA:   3'- gcacuaCUGGG-GUUAGC-GGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 45945 0.67 0.933258
Target:  5'- gCGcGAgGGCCgCCAGggCGCCGUUGAgCa -3'
miRNA:   3'- -GCaCUaCUGG-GGUUa-GCGGCAGCUgG- -5'
23727 3' -54.3 NC_005261.1 + 46164 0.66 0.959186
Target:  5'- ----cUGcGCCCCAGUCGCCGaUgGGCg -3'
miRNA:   3'- gcacuAC-UGGGGUUAGCGGC-AgCUGg -5'
23727 3' -54.3 NC_005261.1 + 47238 0.67 0.917102
Target:  5'- -cUGG-GGCCCCAGaaaGCCGagGACCu -3'
miRNA:   3'- gcACUaCUGGGGUUag-CGGCagCUGG- -5'
23727 3' -54.3 NC_005261.1 + 51259 0.68 0.90514
Target:  5'- cCGUGcUGcugcuguCCCacaaGAUCGCCGUCcuGGCCg -3'
miRNA:   3'- -GCACuACu------GGGg---UUAGCGGCAG--CUGG- -5'
23727 3' -54.3 NC_005261.1 + 51429 0.66 0.959186
Target:  5'- -cUGcugGGCCCCGGgcgCGCCGUgaUGAUCa -3'
miRNA:   3'- gcACua-CUGGGGUUa--GCGGCA--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 52565 0.67 0.933258
Target:  5'- -----cGACUCgcgcgCGAgcUCGCCGUCGACCa -3'
miRNA:   3'- gcacuaCUGGG-----GUU--AGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 54085 0.66 0.94727
Target:  5'- cCGcGcgGACCgCCAcGUUGCCGaUGGCCg -3'
miRNA:   3'- -GCaCuaCUGG-GGU-UAGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 61009 0.66 0.962708
Target:  5'- -----cGGCUCCGgcAUCGCCGUCGuggggcggcACCg -3'
miRNA:   3'- gcacuaCUGGGGU--UAGCGGCAGC---------UGG- -5'
23727 3' -54.3 NC_005261.1 + 63375 0.67 0.933258
Target:  5'- gCG-GGUGugCCgGGUCGCCc-UGGCCg -3'
miRNA:   3'- -GCaCUACugGGgUUAGCGGcaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 63804 0.71 0.760072
Target:  5'- gCGUGAgcgUGAaCCCGA-CGCCGcCGACUg -3'
miRNA:   3'- -GCACU---ACUgGGGUUaGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 71356 0.68 0.883367
Target:  5'- gGUGAgcgccgagagcgcgaGCCCCAGccgCGCCG-CGACCc -3'
miRNA:   3'- gCACUac-------------UGGGGUUa--GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 72353 0.67 0.928112
Target:  5'- aCGUG-UGcACCgCCGAcUCGCCccCGACCa -3'
miRNA:   3'- -GCACuAC-UGG-GGUU-AGCGGcaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 72816 0.67 0.933258
Target:  5'- -aUGAaGACCUCGAggGCCGcaaggcggUCGGCCa -3'
miRNA:   3'- gcACUaCUGGGGUUagCGGC--------AGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 75864 0.69 0.848221
Target:  5'- --cGgcGGCCCCGAcggCGCCGUgGGCg -3'
miRNA:   3'- gcaCuaCUGGGGUUa--GCGGCAgCUGg -5'
23727 3' -54.3 NC_005261.1 + 76672 0.69 0.871195
Target:  5'- cCGUGcUGGCCC---UCGCCGaCGACg -3'
miRNA:   3'- -GCACuACUGGGguuAGCGGCaGCUGg -5'
23727 3' -54.3 NC_005261.1 + 77632 0.68 0.898807
Target:  5'- ---cAUGGCCCUGgccggcgccAUCGCCGaCGGCCg -3'
miRNA:   3'- gcacUACUGGGGU---------UAGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 79319 0.69 0.856084
Target:  5'- -aUGAUGGCCau-GUUGCCGUCcgucuuGACCa -3'
miRNA:   3'- gcACUACUGGgguUAGCGGCAG------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.