miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 1211 0.68 0.90514
Target:  5'- --cGcgGACCCCccgccGAUgcCGCCGUCG-CCg -3'
miRNA:   3'- gcaCuaCUGGGG-----UUA--GCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 2498 0.66 0.955442
Target:  5'- gCG-GGUGGuCCgCGAgccgCGCCG-CGACCu -3'
miRNA:   3'- -GCaCUACU-GGgGUUa---GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 4503 0.66 0.94727
Target:  5'- --cGcgGGCCCCAGUCGCg--CGcCCg -3'
miRNA:   3'- gcaCuaCUGGGGUUAGCGgcaGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 5048 0.67 0.942835
Target:  5'- -------cCCCCucGUCGUCGUCGGCCc -3'
miRNA:   3'- gcacuacuGGGGu-UAGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 10280 0.66 0.959186
Target:  5'- -cUGAggacUGgcGCCCCGAcgcgcagcgccUCGCCGUUGACg -3'
miRNA:   3'- gcACU----AC--UGGGGUU-----------AGCGGCAGCUGg -5'
23727 3' -54.3 NC_005261.1 + 10517 0.68 0.892242
Target:  5'- cCGcUGcgGGCCCCGcggcgcgcUCGCUGUCGcCCc -3'
miRNA:   3'- -GC-ACuaCUGGGGUu-------AGCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 12129 0.68 0.898807
Target:  5'- --gGAUGGCgCCCGc-CGCCGcggCGGCCg -3'
miRNA:   3'- gcaCUACUG-GGGUuaGCGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 15237 0.68 0.885449
Target:  5'- gCGuUGA-GGCCCCGcUCGCaGUgGGCCg -3'
miRNA:   3'- -GC-ACUaCUGGGGUuAGCGgCAgCUGG- -5'
23727 3' -54.3 NC_005261.1 + 15574 0.69 0.868982
Target:  5'- aCGcGGUcGCCUguagcaugacgaagCAGUCGCCGUCGACg -3'
miRNA:   3'- -GCaCUAcUGGG--------------GUUAGCGGCAGCUGg -5'
23727 3' -54.3 NC_005261.1 + 16208 0.71 0.760072
Target:  5'- gCGUGAUGGCCUCGAg-GC--UCGGCCa -3'
miRNA:   3'- -GCACUACUGGGGUUagCGgcAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 16384 0.69 0.848221
Target:  5'- cCGUG--GGCCUCGccGUCGUCGUCG-CCg -3'
miRNA:   3'- -GCACuaCUGGGGU--UAGCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 19889 0.77 0.425497
Target:  5'- cCGUcGUcGCCCCAGUCGCCGUCGuCg -3'
miRNA:   3'- -GCAcUAcUGGGGUUAGCGGCAGCuGg -5'
23727 3' -54.3 NC_005261.1 + 20855 0.66 0.955442
Target:  5'- gCGUGgcGGCUCUug-CGCCGcgggcCGGCCa -3'
miRNA:   3'- -GCACuaCUGGGGuuaGCGGCa----GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 23602 0.67 0.928112
Target:  5'- gGUGGUGGCU---GUCGCCGcCGcuGCCg -3'
miRNA:   3'- gCACUACUGGgguUAGCGGCaGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 28744 0.7 0.806112
Target:  5'- --cGA-GGCCCCAGaggaCGCCG-CGGCCg -3'
miRNA:   3'- gcaCUaCUGGGGUUa---GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 31086 0.7 0.806112
Target:  5'- gCGUGcugGGCCCCAugcCGCCcggCGGCCc -3'
miRNA:   3'- -GCACua-CUGGGGUua-GCGGca-GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 32142 0.66 0.94727
Target:  5'- cCGcUGggGGCUCgGcgCGCCGcugCGGCCg -3'
miRNA:   3'- -GC-ACuaCUGGGgUuaGCGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 34329 0.71 0.769543
Target:  5'- --cGAggGGCCCCAAgggGCCGgggCGGCCg -3'
miRNA:   3'- gcaCUa-CUGGGGUUag-CGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 36377 0.68 0.898807
Target:  5'- -cUGGcacgGGCCCCAGUCuGCCGgcccUGGCCc -3'
miRNA:   3'- gcACUa---CUGGGGUUAG-CGGCa---GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 37621 0.68 0.892242
Target:  5'- gGUGAUGGCCUCua-CGCCuagCGGCg -3'
miRNA:   3'- gCACUACUGGGGuuaGCGGca-GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.