miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23727 3' -54.3 NC_005261.1 + 19889 0.77 0.425497
Target:  5'- cCGUcGUcGCCCCAGUCGCCGUCGuCg -3'
miRNA:   3'- -GCAcUAcUGGGGUUAGCGGCAGCuGg -5'
23727 3' -54.3 NC_005261.1 + 39737 0.74 0.578972
Target:  5'- gCG-GGUG-CCCCAGUCGCgGaucUCGGCCu -3'
miRNA:   3'- -GCaCUACuGGGGUUAGCGgC---AGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 106278 0.73 0.660649
Target:  5'- cCG-GgcGGCCCgugCAAaCGCCGUCGACCu -3'
miRNA:   3'- -GCaCuaCUGGG---GUUaGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 39772 0.72 0.731016
Target:  5'- --gGAUGGCCUCGaggacGUCGCCGgggggcggcgCGGCCg -3'
miRNA:   3'- gcaCUACUGGGGU-----UAGCGGCa---------GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 63804 0.71 0.760072
Target:  5'- gCGUGAgcgUGAaCCCGA-CGCCGcCGACUg -3'
miRNA:   3'- -GCACU---ACUgGGGUUaGCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 16208 0.71 0.760072
Target:  5'- gCGUGAUGGCCUCGAg-GC--UCGGCCa -3'
miRNA:   3'- -GCACUACUGGGGUUagCGgcAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 127961 0.71 0.769543
Target:  5'- aCGUGGUcgUCCgAAUCGUCGUCGuaGCCg -3'
miRNA:   3'- -GCACUAcuGGGgUUAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 34329 0.71 0.769543
Target:  5'- --cGAggGGCCCCAAgggGCCGgggCGGCCg -3'
miRNA:   3'- gcaCUa-CUGGGGUUag-CGGCa--GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 28744 0.7 0.806112
Target:  5'- --cGA-GGCCCCAGaggaCGCCG-CGGCCg -3'
miRNA:   3'- gcaCUaCUGGGGUUa---GCGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 31086 0.7 0.806112
Target:  5'- gCGUGcugGGCCCCAugcCGCCcggCGGCCc -3'
miRNA:   3'- -GCACua-CUGGGGUua-GCGGca-GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 101457 0.7 0.814881
Target:  5'- --cGcUGGCCCCAG-CGCCGcCGGCg -3'
miRNA:   3'- gcaCuACUGGGGUUaGCGGCaGCUGg -5'
23727 3' -54.3 NC_005261.1 + 80016 0.69 0.840162
Target:  5'- gGUGGUcACCCgCuuguuggcGUCGCCGUCGccGCCg -3'
miRNA:   3'- gCACUAcUGGG-Gu-------UAGCGGCAGC--UGG- -5'
23727 3' -54.3 NC_005261.1 + 123182 0.69 0.847424
Target:  5'- gCGUGGUGGCuggugugggcggaCCCAGcCGCCGcguaagcgCGGCCu -3'
miRNA:   3'- -GCACUACUG-------------GGGUUaGCGGCa-------GCUGG- -5'
23727 3' -54.3 NC_005261.1 + 16384 0.69 0.848221
Target:  5'- cCGUG--GGCCUCGccGUCGUCGUCG-CCg -3'
miRNA:   3'- -GCACuaCUGGGGU--UAGCGGCAGCuGG- -5'
23727 3' -54.3 NC_005261.1 + 119524 0.69 0.848221
Target:  5'- -----cGGCCCCGGUCcCCG-CGGCCg -3'
miRNA:   3'- gcacuaCUGGGGUUAGcGGCaGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 75864 0.69 0.848221
Target:  5'- --cGgcGGCCCCGAcggCGCCGUgGGCg -3'
miRNA:   3'- gcaCuaCUGGGGUUa--GCGGCAgCUGg -5'
23727 3' -54.3 NC_005261.1 + 105956 0.69 0.848221
Target:  5'- cCGUcGAUGGCCUCGG-CGCCcagcgcggcGUCGACg -3'
miRNA:   3'- -GCA-CUACUGGGGUUaGCGG---------CAGCUGg -5'
23727 3' -54.3 NC_005261.1 + 82475 0.69 0.853746
Target:  5'- -----cGGCCCCGuccccguccccgccGUCGUCGUCGGCUc -3'
miRNA:   3'- gcacuaCUGGGGU--------------UAGCGGCAGCUGG- -5'
23727 3' -54.3 NC_005261.1 + 79319 0.69 0.856084
Target:  5'- -aUGAUGGCCau-GUUGCCGUCcgucuuGACCa -3'
miRNA:   3'- gcACUACUGGgguUAGCGGCAG------CUGG- -5'
23727 3' -54.3 NC_005261.1 + 132941 0.69 0.863744
Target:  5'- aCGUGGU--CCCCGAgcgcugCGCCGacgUGGCCg -3'
miRNA:   3'- -GCACUAcuGGGGUUa-----GCGGCa--GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.