Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 93243 | 0.66 | 0.962708 |
Target: 5'- -----cGGCCgCC-GUCGCCuUCGACCg -3' miRNA: 3'- gcacuaCUGG-GGuUAGCGGcAGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 123182 | 0.69 | 0.847424 |
Target: 5'- gCGUGGUGGCuggugugggcggaCCCAGcCGCCGcguaagcgCGGCCu -3' miRNA: 3'- -GCACUACUG-------------GGGUUaGCGGCa-------GCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 105956 | 0.69 | 0.848221 |
Target: 5'- cCGUcGAUGGCCUCGG-CGCCcagcgcggcGUCGACg -3' miRNA: 3'- -GCA-CUACUGGGGUUaGCGG---------CAGCUGg -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 75864 | 0.69 | 0.848221 |
Target: 5'- --cGgcGGCCCCGAcggCGCCGUgGGCg -3' miRNA: 3'- gcaCuaCUGGGGUUa--GCGGCAgCUGg -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 119524 | 0.69 | 0.848221 |
Target: 5'- -----cGGCCCCGGUCcCCG-CGGCCg -3' miRNA: 3'- gcacuaCUGGGGUUAGcGGCaGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 16384 | 0.69 | 0.848221 |
Target: 5'- cCGUG--GGCCUCGccGUCGUCGUCG-CCg -3' miRNA: 3'- -GCACuaCUGGGGU--UAGCGGCAGCuGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 82475 | 0.69 | 0.853746 |
Target: 5'- -----cGGCCCCGuccccguccccgccGUCGUCGUCGGCUc -3' miRNA: 3'- gcacuaCUGGGGU--------------UAGCGGCAGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 79319 | 0.69 | 0.856084 |
Target: 5'- -aUGAUGGCCau-GUUGCCGUCcgucuuGACCa -3' miRNA: 3'- gcACUACUGGgguUAGCGGCAG------CUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 106079 | 0.69 | 0.863744 |
Target: 5'- -uUGcgGaACCCCAcagcggcgAUCGCgaCGUCGGCCg -3' miRNA: 3'- gcACuaC-UGGGGU--------UAGCG--GCAGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 80016 | 0.69 | 0.840162 |
Target: 5'- gGUGGUcACCCgCuuguuggcGUCGCCGUCGccGCCg -3' miRNA: 3'- gCACUAcUGGG-Gu-------UAGCGGCAGC--UGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 101457 | 0.7 | 0.814881 |
Target: 5'- --cGcUGGCCCCAG-CGCCGcCGGCg -3' miRNA: 3'- gcaCuACUGGGGUUaGCGGCaGCUGg -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 31086 | 0.7 | 0.806112 |
Target: 5'- gCGUGcugGGCCCCAugcCGCCcggCGGCCc -3' miRNA: 3'- -GCACua-CUGGGGUua-GCGGca-GCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 39737 | 0.74 | 0.578972 |
Target: 5'- gCG-GGUG-CCCCAGUCGCgGaucUCGGCCu -3' miRNA: 3'- -GCaCUACuGGGGUUAGCGgC---AGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 106278 | 0.73 | 0.660649 |
Target: 5'- cCG-GgcGGCCCgugCAAaCGCCGUCGACCu -3' miRNA: 3'- -GCaCuaCUGGG---GUUaGCGGCAGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 39772 | 0.72 | 0.731016 |
Target: 5'- --gGAUGGCCUCGaggacGUCGCCGgggggcggcgCGGCCg -3' miRNA: 3'- gcaCUACUGGGGU-----UAGCGGCa---------GCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 16208 | 0.71 | 0.760072 |
Target: 5'- gCGUGAUGGCCUCGAg-GC--UCGGCCa -3' miRNA: 3'- -GCACUACUGGGGUUagCGgcAGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 63804 | 0.71 | 0.760072 |
Target: 5'- gCGUGAgcgUGAaCCCGA-CGCCGcCGACUg -3' miRNA: 3'- -GCACU---ACUgGGGUUaGCGGCaGCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 127961 | 0.71 | 0.769543 |
Target: 5'- aCGUGGUcgUCCgAAUCGUCGUCGuaGCCg -3' miRNA: 3'- -GCACUAcuGGGgUUAGCGGCAGC--UGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 34329 | 0.71 | 0.769543 |
Target: 5'- --cGAggGGCCCCAAgggGCCGgggCGGCCg -3' miRNA: 3'- gcaCUa-CUGGGGUUag-CGGCa--GCUGG- -5' |
|||||||
23727 | 3' | -54.3 | NC_005261.1 | + | 28744 | 0.7 | 0.806112 |
Target: 5'- --cGA-GGCCCCAGaggaCGCCG-CGGCCg -3' miRNA: 3'- gcaCUaCUGGGGUUa---GCGGCaGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home