miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23731 3' -55.4 NC_005261.1 + 86117 0.66 0.896823
Target:  5'- -cGuCGGagCGCGCUGUACgacGCGUAg -3'
miRNA:   3'- uuC-GCCagGCGCGACAUGaguUGCAU- -5'
23731 3' -55.4 NC_005261.1 + 113034 0.66 0.896823
Target:  5'- aGAGCGGgCCGCGCg-----CGGCGUGg -3'
miRNA:   3'- -UUCGCCaGGCGCGacaugaGUUGCAU- -5'
23731 3' -55.4 NC_005261.1 + 74901 0.66 0.890002
Target:  5'- cGGCGGcCCGCGCUGgcCgc-GCGg- -3'
miRNA:   3'- uUCGCCaGGCGCGACauGaguUGCau -5'
23731 3' -55.4 NC_005261.1 + 13267 0.66 0.875647
Target:  5'- aAAGacuaGGUCCaCGCUGUugUUGGCGg- -3'
miRNA:   3'- -UUCg---CCAGGcGCGACAugAGUUGCau -5'
23731 3' -55.4 NC_005261.1 + 92320 0.66 0.868121
Target:  5'- -cGCGGUCCGCGCg--GCcCAuccGCGg- -3'
miRNA:   3'- uuCGCCAGGCGCGacaUGaGU---UGCau -5'
23731 3' -55.4 NC_005261.1 + 127495 0.66 0.860372
Target:  5'- uGGCGGcugccugCCGgGC-GUACUCGGCGg- -3'
miRNA:   3'- uUCGCCa------GGCgCGaCAUGAGUUGCau -5'
23731 3' -55.4 NC_005261.1 + 104000 0.67 0.847523
Target:  5'- -cGCGGUCggccaguauggcgcgCGCGCUGUACUgcGCGc- -3'
miRNA:   3'- uuCGCCAG---------------GCGCGACAUGAguUGCau -5'
23731 3' -55.4 NC_005261.1 + 71974 0.67 0.844228
Target:  5'- -cGCGGagCGCGCggcagGUGCgCAGCGUc -3'
miRNA:   3'- uuCGCCagGCGCGa----CAUGaGUUGCAu -5'
23731 3' -55.4 NC_005261.1 + 43860 0.67 0.844228
Target:  5'- -cGCGG-CCGCGUcGUcCUCGGCGg- -3'
miRNA:   3'- uuCGCCaGGCGCGaCAuGAGUUGCau -5'
23731 3' -55.4 NC_005261.1 + 106626 0.67 0.835847
Target:  5'- -cGCGGagCCGCGCgacGaGCUCGGCGa- -3'
miRNA:   3'- uuCGCCa-GGCGCGa--CaUGAGUUGCau -5'
23731 3' -55.4 NC_005261.1 + 135292 0.67 0.818506
Target:  5'- cGGCGGguUCCGCGCg--AC-CGGCGUGu -3'
miRNA:   3'- uUCGCC--AGGCGCGacaUGaGUUGCAU- -5'
23731 3' -55.4 NC_005261.1 + 72239 0.68 0.809563
Target:  5'- cGGCGGUgCGCGCaa-AgUCGACGUGa -3'
miRNA:   3'- uUCGCCAgGCGCGacaUgAGUUGCAU- -5'
23731 3' -55.4 NC_005261.1 + 2661 0.68 0.809563
Target:  5'- cGGCGGcucccgCCGCGCUGgggACcCGGCGg- -3'
miRNA:   3'- uUCGCCa-----GGCGCGACa--UGaGUUGCau -5'
23731 3' -55.4 NC_005261.1 + 67086 0.68 0.809563
Target:  5'- cGGGCGGUCCaugGCGCgacgcgGUGCgggCGGCGc- -3'
miRNA:   3'- -UUCGCCAGG---CGCGa-----CAUGa--GUUGCau -5'
23731 3' -55.4 NC_005261.1 + 74158 0.68 0.791177
Target:  5'- cAGCGGggcaUGCGC-GUGCUCAAgGUGa -3'
miRNA:   3'- uUCGCCag--GCGCGaCAUGAGUUgCAU- -5'
23731 3' -55.4 NC_005261.1 + 24433 0.68 0.781752
Target:  5'- -uGCGGUCCGCGgCgauggacgaggUGUGCUCcGCGc- -3'
miRNA:   3'- uuCGCCAGGCGC-G-----------ACAUGAGuUGCau -5'
23731 3' -55.4 NC_005261.1 + 65856 0.68 0.762487
Target:  5'- uAGCGGUCCGCGgcggcUUGUACagcccCAGCGg- -3'
miRNA:   3'- uUCGCCAGGCGC-----GACAUGa----GUUGCau -5'
23731 3' -55.4 NC_005261.1 + 105384 0.69 0.742733
Target:  5'- -cGCgGGUgCGCGCUGaccacgcgccGCUCGACGUAg -3'
miRNA:   3'- uuCG-CCAgGCGCGACa---------UGAGUUGCAU- -5'
23731 3' -55.4 NC_005261.1 + 30210 0.69 0.732698
Target:  5'- gAGGCGG-CCGCGCUGgcgGCgCGAacCGUGg -3'
miRNA:   3'- -UUCGCCaGGCGCGACa--UGaGUU--GCAU- -5'
23731 3' -55.4 NC_005261.1 + 132942 0.69 0.722571
Target:  5'- -cGUGGUCCccgaGCGCUGcGC-CGACGUGg -3'
miRNA:   3'- uuCGCCAGG----CGCGACaUGaGUUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.