Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23731 | 5' | -50.5 | NC_005261.1 | + | 54824 | 0.66 | 0.99447 |
Target: 5'- gUCCGCGUCAuacgcgggcaGGgcUA--GCUGCCgGCGc -3' miRNA: 3'- -AGGUGCAGU----------UCauAUacUGACGG-CGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 28605 | 0.66 | 0.994386 |
Target: 5'- cCCGCGcCGAGcUGgcggagcUGUGGCgcauggugGCCGCGg -3' miRNA: 3'- aGGUGCaGUUC-AU-------AUACUGa-------CGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 13135 | 0.66 | 0.993583 |
Target: 5'- -gCGCGUguGGUcgGUGACgGCgCGCa -3' miRNA: 3'- agGUGCAguUCAuaUACUGaCG-GCGc -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 622 | 0.66 | 0.993583 |
Target: 5'- cCCgACG-CAGGggAUGUGGCggcgGCCGCc -3' miRNA: 3'- aGG-UGCaGUUCa-UAUACUGa---CGGCGc -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 133360 | 0.66 | 0.992585 |
Target: 5'- gCCGCG-CAGGgcuucGGCUGCCuGCGc -3' miRNA: 3'- aGGUGCaGUUCauauaCUGACGG-CGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 71921 | 0.66 | 0.991468 |
Target: 5'- -gCACGUCGuugacGUcaaaGGCUGCCGCGc -3' miRNA: 3'- agGUGCAGUu----CAuauaCUGACGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 65693 | 0.66 | 0.990737 |
Target: 5'- gUCCACGUCcagaAAGgacggGUGACagagcgugcccaugGCCGCGc -3' miRNA: 3'- -AGGUGCAG----UUCaua--UACUGa-------------CGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 76905 | 0.66 | 0.990222 |
Target: 5'- cCCACGUCGcgcuGUGcgugcugGGCcGCCGCGu -3' miRNA: 3'- aGGUGCAGUu---CAUaua----CUGaCGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 69880 | 0.66 | 0.990222 |
Target: 5'- aCCGgGcgCGAGUGUGUGugUuuuGCCGgGg -3' miRNA: 3'- aGGUgCa-GUUCAUAUACugA---CGGCgC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 37949 | 0.66 | 0.990222 |
Target: 5'- gCCGCGUCGAGcggGUG-CUGCCc-- -3' miRNA: 3'- aGGUGCAGUUCauaUACuGACGGcgc -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 64054 | 0.67 | 0.988838 |
Target: 5'- gCCGCGU--GGUGcgccaccGGCUGCCGCa -3' miRNA: 3'- aGGUGCAguUCAUaua----CUGACGGCGc -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 118209 | 0.67 | 0.988838 |
Target: 5'- gCCGCGcugcgCGGGgcgcUGACgGCCGCGg -3' miRNA: 3'- aGGUGCa----GUUCauauACUGaCGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 87477 | 0.67 | 0.985617 |
Target: 5'- -gCGCGUCAGGUuc--GGCgcgGCCGUGc -3' miRNA: 3'- agGUGCAGUUCAuauaCUGa--CGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 116816 | 0.67 | 0.985617 |
Target: 5'- cUCUACGacgagCAGGUGUacGUGGCcguccccGCCGCGa -3' miRNA: 3'- -AGGUGCa----GUUCAUA--UACUGa------CGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 31646 | 0.67 | 0.981729 |
Target: 5'- uUCCGCGgcgcggUCGAGUAccucugccUGcGGCUgGCCGCGg -3' miRNA: 3'- -AGGUGC------AGUUCAU--------AUaCUGA-CGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 45181 | 0.68 | 0.968622 |
Target: 5'- aCCGCGcCGAGUGUGaGGCcaUGCCGg- -3' miRNA: 3'- aGGUGCaGUUCAUAUaCUG--ACGGCgc -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 84980 | 0.69 | 0.958119 |
Target: 5'- gUCCGCGaugCGccggcgcacccAGUGcAUGACgGCCGCGg -3' miRNA: 3'- -AGGUGCa--GU-----------UCAUaUACUGaCGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 88458 | 0.7 | 0.94543 |
Target: 5'- gCCGCGUgAGcGUGUGggcgGGCcgUGCCGCGc -3' miRNA: 3'- aGGUGCAgUU-CAUAUa---CUG--ACGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 32010 | 0.7 | 0.935702 |
Target: 5'- gCCGCG-CGAGUAccggcagcgcGUG-CUGCCGCGg -3' miRNA: 3'- aGGUGCaGUUCAUa---------UACuGACGGCGC- -5' |
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23731 | 5' | -50.5 | NC_005261.1 | + | 113564 | 0.71 | 0.900295 |
Target: 5'- aCCGCGagCAguGGUcgGUGGCcGCCGCGc -3' miRNA: 3'- aGGUGCa-GU--UCAuaUACUGaCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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