miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 106285 0.68 0.917314
Target:  5'- gCC-CGUGcaaacGCCGUCGAccuCGGC--GAGCa -3'
miRNA:   3'- -GGaGCAU-----CGGCAGCUu--GCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 105153 0.66 0.972403
Target:  5'- uCCUCGcGGCUcgaGGGCGGCGUccacgGGGCc -3'
miRNA:   3'- -GGAGCaUCGGcagCUUGCCGUA-----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 104988 0.68 0.917314
Target:  5'- gCCcCGgcGCCcagcgCGGGCGGCGgucgGGGCg -3'
miRNA:   3'- -GGaGCauCGGca---GCUUGCCGUa---CUCG- -5'
23735 5' -53.5 NC_005261.1 + 103849 0.69 0.89888
Target:  5'- cCCUUGcgcgcgAGCCG-CGGcgGCGGCG-GGGCg -3'
miRNA:   3'- -GGAGCa-----UCGGCaGCU--UGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 103598 0.67 0.955846
Target:  5'- gCCgcCGUGGCCG-CG-GCGGCAgcgcggGAGg -3'
miRNA:   3'- -GGa-GCAUCGGCaGCuUGCCGUa-----CUCg -5'
23735 5' -53.5 NC_005261.1 + 103502 0.68 0.917314
Target:  5'- uCgUCGgcGCCG-CGGACGGC---GGCg -3'
miRNA:   3'- -GgAGCauCGGCaGCUUGCCGuacUCG- -5'
23735 5' -53.5 NC_005261.1 + 102786 0.66 0.966429
Target:  5'- gCCUCGccccGGCCG-CGAgcGCGGCGcccAGCc -3'
miRNA:   3'- -GGAGCa---UCGGCaGCU--UGCCGUac-UCG- -5'
23735 5' -53.5 NC_005261.1 + 102305 0.66 0.972403
Target:  5'- -gUCGUAGCCGcgcgccgCGGccGCGGCGcGcAGCc -3'
miRNA:   3'- ggAGCAUCGGCa------GCU--UGCCGUaC-UCG- -5'
23735 5' -53.5 NC_005261.1 + 101674 0.68 0.928396
Target:  5'- gCCUCGUaggccgAGCCGgCGAAgcgGGCGUGgucgaAGCg -3'
miRNA:   3'- -GGAGCA------UCGGCaGCUUg--CCGUAC-----UCG- -5'
23735 5' -53.5 NC_005261.1 + 98949 0.73 0.709442
Target:  5'- uCCUCGUAGUCGagCGucaggcuCGGCAggucccgGAGCa -3'
miRNA:   3'- -GGAGCAUCGGCa-GCuu-----GCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 98180 0.69 0.871028
Target:  5'- uCCUUGgAGCCGcCGGgggcGCGGCGggcagcGGGCg -3'
miRNA:   3'- -GGAGCaUCGGCaGCU----UGCCGUa-----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 98139 0.66 0.972403
Target:  5'- aCCg-GcGGCCGUCG-GCGGCAaggccgcGGGCg -3'
miRNA:   3'- -GGagCaUCGGCAGCuUGCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 98046 0.69 0.89888
Target:  5'- aCUgGcGGCCG-CGGGCGGCGggaccgcGGGCg -3'
miRNA:   3'- gGAgCaUCGGCaGCUUGCCGUa------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 96118 0.66 0.963124
Target:  5'- aCgUCGcUGGCCaugGUCGAccuGCGGCGgcGGCa -3'
miRNA:   3'- -GgAGC-AUCGG---CAGCU---UGCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 94855 0.71 0.805306
Target:  5'- gCCUCGgcGCuCG-CGcACGGCccGGGCg -3'
miRNA:   3'- -GGAGCauCG-GCaGCuUGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 93826 0.71 0.805306
Target:  5'- aCCgcCGcAGCCGcCGGGCGGCGccgccGAGCa -3'
miRNA:   3'- -GGa-GCaUCGGCaGCUUGCCGUa----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 93717 0.76 0.555736
Target:  5'- uCCUCGUcGUCGUCG-GCGGCGgcAGCg -3'
miRNA:   3'- -GGAGCAuCGGCAGCuUGCCGUacUCG- -5'
23735 5' -53.5 NC_005261.1 + 93549 0.68 0.933065
Target:  5'- gCCgcccaGUAGCgGUCGAcggcgguGCGGCggGAcGCg -3'
miRNA:   3'- -GGag---CAUCGgCAGCU-------UGCCGuaCU-CG- -5'
23735 5' -53.5 NC_005261.1 + 90996 0.66 0.966429
Target:  5'- aCCUCGgccUCGUCGccGGCGGCAaGAuGCu -3'
miRNA:   3'- -GGAGCaucGGCAGC--UUGCCGUaCU-CG- -5'
23735 5' -53.5 NC_005261.1 + 87391 0.7 0.863507
Target:  5'- uCCUCG--GCCGUCGucucGACGGCGccgucgacGGGCg -3'
miRNA:   3'- -GGAGCauCGGCAGC----UUGCCGUa-------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.