Results 41 - 60 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 64670 | 0.76 | 0.535622 |
Target: 5'- aCUCGUcGCCGUgGuGCGGCAccGGGCg -3' miRNA: 3'- gGAGCAuCGGCAgCuUGCCGUa-CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 120589 | 0.77 | 0.505954 |
Target: 5'- gCgUCGUGGCCGUCGccuGCGGCcucGGCg -3' miRNA: 3'- -GgAGCAUCGGCAGCu--UGCCGuacUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 46079 | 0.78 | 0.439752 |
Target: 5'- gCCUCGUGGCCGgacaCGAgcacguACGGCcgGGGg -3' miRNA: 3'- -GGAGCAUCGGCa---GCU------UGCCGuaCUCg -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 2607 | 0.78 | 0.430698 |
Target: 5'- gCCgUCGgcggcggGGCCGcCGGGCGGCAUGGGg -3' miRNA: 3'- -GG-AGCa------UCGGCaGCUUGCCGUACUCg -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 61179 | 0.81 | 0.288192 |
Target: 5'- uCUUCGUGGCCGUCGAG-GGCAacAGCa -3' miRNA: 3'- -GGAGCAUCGGCAGCUUgCCGUacUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 98949 | 0.73 | 0.709442 |
Target: 5'- uCCUCGUAGUCGagCGucaggcuCGGCAggucccgGAGCa -3' miRNA: 3'- -GGAGCAUCGGCa-GCuu-----GCCGUa------CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 121537 | 0.73 | 0.719485 |
Target: 5'- uCCUCGUcGCUGUCGGAgccgccguccuCGGCGaaGGGCg -3' miRNA: 3'- -GGAGCAuCGGCAGCUU-----------GCCGUa-CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 84951 | 0.71 | 0.822855 |
Target: 5'- uCCUCGgcGGCCGcCGA--GGCGUcGGGCg -3' miRNA: 3'- -GGAGCa-UCGGCaGCUugCCGUA-CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 32477 | 0.71 | 0.822855 |
Target: 5'- aCUCGggcuucccggGGCCGgCGAcgGCGGCAUcGGCg -3' miRNA: 3'- gGAGCa---------UCGGCaGCU--UGCCGUAcUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 94855 | 0.71 | 0.805306 |
Target: 5'- gCCUCGgcGCuCG-CGcACGGCccGGGCg -3' miRNA: 3'- -GGAGCauCG-GCaGCuUGCCGuaCUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 93826 | 0.71 | 0.805306 |
Target: 5'- aCCgcCGcAGCCGcCGGGCGGCGccgccGAGCa -3' miRNA: 3'- -GGa-GCaUCGGCaGCUUGCCGUa----CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 50983 | 0.71 | 0.805306 |
Target: 5'- aCCUCucGGCCGaCG-GCGGCgcGUGGGCg -3' miRNA: 3'- -GGAGcaUCGGCaGCuUGCCG--UACUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 33596 | 0.71 | 0.805306 |
Target: 5'- aCCaggggCGgcGCCGgcgCGGGCGGCG-GGGCc -3' miRNA: 3'- -GGa----GCauCGGCa--GCUUGCCGUaCUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 41365 | 0.71 | 0.796288 |
Target: 5'- gCCUCGUGGugaCCGUCaccUGGCuguUGAGCa -3' miRNA: 3'- -GGAGCAUC---GGCAGcuuGCCGu--ACUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 17059 | 0.71 | 0.796288 |
Target: 5'- gCUCGcGGCCGUCcuggaagggcGACGGgAUGGGCc -3' miRNA: 3'- gGAGCaUCGGCAGc---------UUGCCgUACUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 14096 | 0.71 | 0.796288 |
Target: 5'- aCUCGcGGUCGUCGA--GGCAgacGGGCg -3' miRNA: 3'- gGAGCaUCGGCAGCUugCCGUa--CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 82594 | 0.71 | 0.787119 |
Target: 5'- uCCUCGUugcGCUGgucCGGGCG-CGUGAGCc -3' miRNA: 3'- -GGAGCAu--CGGCa--GCUUGCcGUACUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 131994 | 0.72 | 0.768364 |
Target: 5'- cCUUCGcAGUCG-CGGACGGCGacaacUGGGCc -3' miRNA: 3'- -GGAGCaUCGGCaGCUUGCCGU-----ACUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 127830 | 0.72 | 0.758797 |
Target: 5'- gCUCGcGGCCG-CGAGCaGCGgacgGGGCg -3' miRNA: 3'- gGAGCaUCGGCaGCUUGcCGUa---CUCG- -5' |
|||||||
23735 | 5' | -53.5 | NC_005261.1 | + | 81332 | 0.72 | 0.749116 |
Target: 5'- gCCgUCGUcggGGCCGUCGGcGgGGCggGGGCu -3' miRNA: 3'- -GG-AGCA---UCGGCAGCU-UgCCGuaCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home