miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23735 5' -53.5 NC_005261.1 + 127332 0.66 0.959598
Target:  5'- cCCgCGggGGCCG--GAGCGGCG-GGGCg -3'
miRNA:   3'- -GGaGCa-UCGGCagCUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 55068 0.66 0.959598
Target:  5'- gCUCG--GCCGcCGAA-GGCAUGcGCa -3'
miRNA:   3'- gGAGCauCGGCaGCUUgCCGUACuCG- -5'
23735 5' -53.5 NC_005261.1 + 16295 0.66 0.959598
Target:  5'- ---gGgcGCCGUCGGgcccaGCGGCGgccGGGCc -3'
miRNA:   3'- ggagCauCGGCAGCU-----UGCCGUa--CUCG- -5'
23735 5' -53.5 NC_005261.1 + 2524 0.66 0.959598
Target:  5'- aCCUCGgggcggcaguaGGCCGccagCGccGCGGCGcUGGGCg -3'
miRNA:   3'- -GGAGCa----------UCGGCa---GCu-UGCCGU-ACUCG- -5'
23735 5' -53.5 NC_005261.1 + 47857 0.66 0.959598
Target:  5'- --gCGUGGCCGagCGuagccAGCGGCAgcguccgggGAGCg -3'
miRNA:   3'- ggaGCAUCGGCa-GC-----UUGCCGUa--------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 85910 0.66 0.958496
Target:  5'- gCCUCgGUGGCCugcUCGAccgugcucuggaugGCGGCcaGGGCg -3'
miRNA:   3'- -GGAG-CAUCGGc--AGCU--------------UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 69501 0.67 0.955846
Target:  5'- aCCU-GUAcGCCGgcggCGGGCuGCcgGAGCu -3'
miRNA:   3'- -GGAgCAU-CGGCa---GCUUGcCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 103598 0.67 0.955846
Target:  5'- gCCgcCGUGGCCG-CG-GCGGCAgcgcggGAGg -3'
miRNA:   3'- -GGa-GCAUCGGCaGCuUGCCGUa-----CUCg -5'
23735 5' -53.5 NC_005261.1 + 87088 0.67 0.951865
Target:  5'- --aCGUAGCCGUgcaGcAGCGcGCA-GAGCg -3'
miRNA:   3'- ggaGCAUCGGCAg--C-UUGC-CGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 67802 0.67 0.947649
Target:  5'- gCCUCGgcGCCGcccaguggcaacUCGGGCGcGCGcagGAGg -3'
miRNA:   3'- -GGAGCauCGGC------------AGCUUGC-CGUa--CUCg -5'
23735 5' -53.5 NC_005261.1 + 55437 0.67 0.943197
Target:  5'- aCCgCG-AGCCcucCGAGCGGCgcgGUGGGCc -3'
miRNA:   3'- -GGaGCaUCGGca-GCUUGCCG---UACUCG- -5'
23735 5' -53.5 NC_005261.1 + 47516 0.67 0.938505
Target:  5'- uCUUCGUGGUCagcUCGAacucgACGGCGUucccGGGCg -3'
miRNA:   3'- -GGAGCAUCGGc--AGCU-----UGCCGUA----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 76543 0.67 0.938505
Target:  5'- aCCUC---GCCcUCu-ACGGCAUGGGCg -3'
miRNA:   3'- -GGAGcauCGGcAGcuUGCCGUACUCG- -5'
23735 5' -53.5 NC_005261.1 + 85574 0.68 0.933572
Target:  5'- gUUCGgcGCCG-CGAccGCGGCcuccgcGAGCg -3'
miRNA:   3'- gGAGCauCGGCaGCU--UGCCGua----CUCG- -5'
23735 5' -53.5 NC_005261.1 + 14157 0.68 0.933572
Target:  5'- gCUCc-AGCCG-CGAACGGCGcgcgucucgGGGCg -3'
miRNA:   3'- gGAGcaUCGGCaGCUUGCCGUa--------CUCG- -5'
23735 5' -53.5 NC_005261.1 + 93549 0.68 0.933065
Target:  5'- gCCgcccaGUAGCgGUCGAcggcgguGCGGCggGAcGCg -3'
miRNA:   3'- -GGag---CAUCGgCAGCU-------UGCCGuaCU-CG- -5'
23735 5' -53.5 NC_005261.1 + 101674 0.68 0.928396
Target:  5'- gCCUCGUaggccgAGCCGgCGAAgcgGGCGUGgucgaAGCg -3'
miRNA:   3'- -GGAGCA------UCGGCaGCUUg--CCGUAC-----UCG- -5'
23735 5' -53.5 NC_005261.1 + 31474 0.68 0.928396
Target:  5'- gCCUgaGUGGCCGcCGGugcGCGGC--GGGCu -3'
miRNA:   3'- -GGAg-CAUCGGCaGCU---UGCCGuaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 13377 0.68 0.927865
Target:  5'- gCUCGUacAGCCGgcuguacgcggucUCgGAGCGGUA-GGGCg -3'
miRNA:   3'- gGAGCA--UCGGC-------------AG-CUUGCCGUaCUCG- -5'
23735 5' -53.5 NC_005261.1 + 115969 0.68 0.926795
Target:  5'- aCCUCGUccuccgagguguAGUCGUCGcuGacgagccgcccgagGCGGCcUGAGCc -3'
miRNA:   3'- -GGAGCA------------UCGGCAGC--U--------------UGCCGuACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.