miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2374 5' -62.4 NC_001416.1 + 8641 0.66 0.361657
Target:  5'- aGGCGGAuuuUCCGGCagUUGCCGUuuaucucaccggCGCUGa- -3'
miRNA:   3'- -CCGCCU---GGGCCG--AAUGGCG------------GCGGCag -5'
2374 5' -62.4 NC_001416.1 + 5780 0.66 0.337648
Target:  5'- gGGCaacaguGACCCGGCUcaUACCGCaaCCG-Cg -3'
miRNA:   3'- -CCGc-----CUGGGCCGA--AUGGCGgcGGCaG- -5'
2374 5' -62.4 NC_001416.1 + 10132 0.67 0.279408
Target:  5'- uGCGGGCCCGGCgu-CCuCUGuCUGUUc -3'
miRNA:   3'- cCGCCUGGGCCGaauGGcGGC-GGCAG- -5'
2374 5' -62.4 NC_001416.1 + 12303 0.68 0.272717
Target:  5'- uGGCGG-CCCGuuUUGCCcguuGCUGCUGUg -3'
miRNA:   3'- -CCGCCuGGGCcgAAUGG----CGGCGGCAg -5'
2374 5' -62.4 NC_001416.1 + 19037 0.68 0.24359
Target:  5'- cGGUGGGCuauuuucaagugaaaCCGGguacaUUGCCGUCGuuGUCg -3'
miRNA:   3'- -CCGCCUG---------------GGCCg----AAUGGCGGCggCAG- -5'
2374 5' -62.4 NC_001416.1 + 16509 0.69 0.229446
Target:  5'- aGGUGauGCgCGGCUccgUGCCGCCaaaGCCGUCc -3'
miRNA:   3'- -CCGCc-UGgGCCGA---AUGGCGG---CGGCAG- -5'
2374 5' -62.4 NC_001416.1 + 17300 0.7 0.197106
Target:  5'- cGGCGGugaUGGCaUACgUGCCGUCGUCg -3'
miRNA:   3'- -CCGCCuggGCCGaAUG-GCGGCGGCAG- -5'
2374 5' -62.4 NC_001416.1 + 8024 0.72 0.14045
Target:  5'- cGGCGGuGCCUGGU--GCCGCCGCa--- -3'
miRNA:   3'- -CCGCC-UGGGCCGaaUGGCGGCGgcag -5'
2374 5' -62.4 NC_001416.1 + 7895 0.74 0.096424
Target:  5'- uGGCGGAaguugucaucUCUGGCUuggacggggcgUACCGCCuGCCGUUa -3'
miRNA:   3'- -CCGCCU----------GGGCCGA-----------AUGGCGG-CGGCAG- -5'
2374 5' -62.4 NC_001416.1 + 6430 1.11 0.000145
Target:  5'- uGGCGGACCCGGCUUACCGCCGCCGUCg -3'
miRNA:   3'- -CCGCCUGGGCCGAAUGGCGGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.