miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 12721 0.68 0.524006
Target:  5'- uCGGGCGCGCGgGCccgccggcccccuggGCGGGcccgGCGAGg -3'
miRNA:   3'- -GCCCGCGCGUgCG---------------CGUCCacg-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 13044 0.67 0.558537
Target:  5'- aGGGCGCGgggcCGCGCGCGccccugccGG-GCGCGu- -3'
miRNA:   3'- gCCCGCGC----GUGCGCGU--------CCaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 13132 0.68 0.500513
Target:  5'- gGGGCGCGUguggucggugacgGCGCGCAccaGGcgGUcCGAGg -3'
miRNA:   3'- gCCCGCGCG-------------UGCGCGU---CCa-CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 13413 0.67 0.539262
Target:  5'- aGGGCGaCGCgaaggcgcaccGCGCGUcgaccGGGUGCAgGcAGg -3'
miRNA:   3'- gCCCGC-GCG-----------UGCGCG-----UCCACGUgC-UC- -5'
23740 3' -62.2 NC_005261.1 + 13684 0.78 0.111648
Target:  5'- gGGGCGCGCGgGCGUGGGgcggggcggGCugGGGg -3'
miRNA:   3'- gCCCGCGCGUgCGCGUCCa--------CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 14455 0.67 0.562416
Target:  5'- gGGGCGCGCGgcggagcuCGCGCugguccuccaacgcGGUGUaagacaGCGAGc -3'
miRNA:   3'- gCCCGCGCGU--------GCGCGu-------------CCACG------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 14777 0.7 0.372089
Target:  5'- gGGGC-CGCccCGCGCAGGUGC-CGc- -3'
miRNA:   3'- gCCCGcGCGu-GCGCGUCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 14962 0.66 0.637055
Target:  5'- gCGGGCGUGcCugGgGCGacUGCGCGGc -3'
miRNA:   3'- -GCCCGCGC-GugCgCGUccACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 15509 0.67 0.558537
Target:  5'- gGGGCGUGUgucgGCGUGCAG--GCAgGAGc -3'
miRNA:   3'- gCCCGCGCG----UGCGCGUCcaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 15789 0.66 0.607451
Target:  5'- gCGGGCGcCGCcCGCGCGGccaGCGCc-- -3'
miRNA:   3'- -GCCCGC-GCGuGCGCGUCca-CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 16175 0.76 0.166307
Target:  5'- gGGGCGCGgGCgugGCGgGGGUGgGCGGGg -3'
miRNA:   3'- gCCCGCGCgUG---CGCgUCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 17481 0.66 0.607451
Target:  5'- gCGGGCGCGC-CG-GgGGGUccuagacgcggaGCAUGGGc -3'
miRNA:   3'- -GCCCGCGCGuGCgCgUCCA------------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 18592 0.66 0.607451
Target:  5'- aGGGCGCaGC-CGUGCgAGGUGUcCGu- -3'
miRNA:   3'- gCCCGCG-CGuGCGCG-UCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 18979 0.74 0.22146
Target:  5'- gGGGCGCGCACGaaaGuCAaaggucaacaucuGGUGCAgGAGg -3'
miRNA:   3'- gCCCGCGCGUGCg--C-GU-------------CCACGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 19253 0.72 0.286245
Target:  5'- gGGGCGCugaacaGCGCGCGCGGGUaCGCcAGc -3'
miRNA:   3'- gCCCGCG------CGUGCGCGUCCAcGUGcUC- -5'
23740 3' -62.2 NC_005261.1 + 19493 0.68 0.464837
Target:  5'- uGGGCGauccgGCGggaGUGCAGGUaCGCGAGg -3'
miRNA:   3'- gCCCGCg----CGUg--CGCGUCCAcGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 19838 0.67 0.557568
Target:  5'- ----aGCGCGCGCGCGGcGUccucggcuuccucGCGCGAGa -3'
miRNA:   3'- gcccgCGCGUGCGCGUC-CA-------------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 20443 0.67 0.548873
Target:  5'- gGGGaGCGCAgacgugccCGCGCGGGUGUggcgcuuccuuGCGGa -3'
miRNA:   3'- gCCCgCGCGU--------GCGCGUCCACG-----------UGCUc -5'
23740 3' -62.2 NC_005261.1 + 20564 0.72 0.313009
Target:  5'- gCGGGCuGCGCAgcgGCGCcGGcgGCGCGGGu -3'
miRNA:   3'- -GCCCG-CGCGUg--CGCGuCCa-CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 21036 0.72 0.315788
Target:  5'- gGGGCGCGCAcCGUGCGccauccuuuaaaggcGGcGCACGGu -3'
miRNA:   3'- gCCCGCGCGU-GCGCGU---------------CCaCGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.