miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 70 0.74 0.21171
Target:  5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 455 0.66 0.607451
Target:  5'- aCGGGgGC-CGCGacggccgGCGGGaugGCGCGGGg -3'
miRNA:   3'- -GCCCgCGcGUGCg------CGUCCa--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 522 0.74 0.21171
Target:  5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3'
miRNA:   3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 978 0.66 0.597608
Target:  5'- gCGGGcCGCGCGCagaGCGgAGGagacggGgGCGGGg -3'
miRNA:   3'- -GCCC-GCGCGUG---CGCgUCCa-----CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 1720 0.74 0.232679
Target:  5'- gCGcGGCG-GCACGgGCAccgcGGUGCGCGGGc -3'
miRNA:   3'- -GC-CCGCgCGUGCgCGU----CCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 1889 0.66 0.606466
Target:  5'- aCGGcGCGCGCcaGCGCGCgccgcucAGGccagcGCGCGGc -3'
miRNA:   3'- -GCC-CGCGCG--UGCGCG-------UCCa----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 1940 0.69 0.429671
Target:  5'- gCGGGCagcacCGCgGCGCGCAGGUaCACGuGc -3'
miRNA:   3'- -GCCCGc----GCG-UGCGCGUCCAcGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 2386 0.66 0.58681
Target:  5'- aGcGGCGCGCugGCggcgagcgcgcccGCGGGccccGCGCGGc -3'
miRNA:   3'- gC-CCGCGCGugCG-------------CGUCCa---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 2561 0.69 0.447062
Target:  5'- uGGGCGCGgGCGUGUgguacuccccGGGcgGCACGcGg -3'
miRNA:   3'- gCCCGCGCgUGCGCG----------UCCa-CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 3415 0.68 0.473862
Target:  5'- gCGGGCugaagaGCGCGCGgGCcagcguccaggcGGGcGCGCGGGc -3'
miRNA:   3'- -GCCCG------CGCGUGCgCG------------UCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 3544 0.69 0.421126
Target:  5'- -cGGCGCGCA-GCGCGGcGgGCGCGGc -3'
miRNA:   3'- gcCCGCGCGUgCGCGUC-CaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 3949 0.8 0.09345
Target:  5'- uGGGCGCGUACGCGCgccgcAGGcucUGCAgGAGg -3'
miRNA:   3'- gCCCGCGCGUGCGCG-----UCC---ACGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 4504 0.72 0.292763
Target:  5'- gCGGGCcccagucgcGCGCcCGCGCGGGcGCcgcgGCGAGg -3'
miRNA:   3'- -GCCCG---------CGCGuGCGCGUCCaCG----UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 5285 0.67 0.558537
Target:  5'- cCGGcCGCgGUGCGCGCGGGUccCugGAGa -3'
miRNA:   3'- -GCCcGCG-CGUGCGCGUCCAc-GugCUC- -5'
23740 3' -62.2 NC_005261.1 + 5736 0.67 0.529709
Target:  5'- gCGGGagaaGCGCGCGCGgaAGGUGa--GGGu -3'
miRNA:   3'- -GCCCg---CGCGUGCGCg-UCCACgugCUC- -5'
23740 3' -62.2 NC_005261.1 + 9619 0.67 0.568248
Target:  5'- gGGGUGgGCAgGCGggggugggggcUGGGUGgGCGGGg -3'
miRNA:   3'- gCCCGCgCGUgCGC-----------GUCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 10021 0.67 0.558537
Target:  5'- cCGGGCGgGCcuCGCGuCGGGgGCGCu-- -3'
miRNA:   3'- -GCCCGCgCGu-GCGC-GUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 11471 0.71 0.327087
Target:  5'- gCGGGCGCGgAgGgGCGGG-GCGgGGGu -3'
miRNA:   3'- -GCCCGCGCgUgCgCGUCCaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 11846 0.69 0.412684
Target:  5'- gCGGGCGCGCGuuCGCGa----GCGCGAGc -3'
miRNA:   3'- -GCCCGCGCGU--GCGCguccaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 12311 0.72 0.273554
Target:  5'- aCGGGCGCGUagccggcgggcGCGCGCuuGGccgGCGCGGc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCGCGu-CCa--CGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.