miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 66618 0.66 0.637055
Target:  5'- -uGGCGCGCGUGCGCAuG-GCcgACGAGa -3'
miRNA:   3'- gcCCGCGCGUGCGCGUcCaCG--UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 57116 0.76 0.158344
Target:  5'- aGGaCGCGCACGCGCAGGguggGCagACGAu -3'
miRNA:   3'- gCCcGCGCGUGCGCGUCCa---CG--UGCUc -5'
23740 3' -62.2 NC_005261.1 + 89099 0.76 0.158344
Target:  5'- cCGGGCGCGCugGCGCGcgcguGGcacUGCGCGc- -3'
miRNA:   3'- -GCCCGCGCGugCGCGU-----CC---ACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 38945 0.76 0.158344
Target:  5'- cCGGGCGgGCcgcgGCGCGCGGGcUGCGCa-- -3'
miRNA:   3'- -GCCCGCgCG----UGCGCGUCC-ACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 16175 0.76 0.166307
Target:  5'- gGGGCGCGgGCgugGCGgGGGUGgGCGGGg -3'
miRNA:   3'- gCCCGCGCgUG---CGCgUCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 59565 0.76 0.166307
Target:  5'- uCGGcGCGCGCGCGCGCcgcagcGGGUGcCGCGc- -3'
miRNA:   3'- -GCC-CGCGCGUGCGCG------UCCAC-GUGCuc -5'
23740 3' -62.2 NC_005261.1 + 51367 0.75 0.178926
Target:  5'- cCGGcGCGgaGUACGCGCAGGccgUGCGCGAa -3'
miRNA:   3'- -GCC-CGCg-CGUGCGCGUCC---ACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 64484 0.75 0.178926
Target:  5'- cCGGGUGCaGCGggugGCGCGGGUGCuCGGGg -3'
miRNA:   3'- -GCCCGCG-CGUg---CGCGUCCACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 105298 0.75 0.178926
Target:  5'- cCGGGCGCGCGaGCGCGGGguccucGCACu-- -3'
miRNA:   3'- -GCCCGCGCGUgCGCGUCCa-----CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 136614 0.77 0.150726
Target:  5'- aGcGGCGCGCGCGCGCcgAGG-GCgGCGGGa -3'
miRNA:   3'- gC-CCGCGCGUGCGCG--UCCaCG-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 100724 0.77 0.150354
Target:  5'- gCGGccgcgccGCGCGCGCGCGCGGcGgcgcgcgGCACGAGc -3'
miRNA:   3'- -GCC-------CGCGCGUGCGCGUC-Ca------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 100318 0.77 0.147044
Target:  5'- gCGGGCGCGCucgaucuccAgGCGCAGGUuCACGAu -3'
miRNA:   3'- -GCCCGCGCG---------UgCGCGUCCAcGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 71970 0.81 0.078087
Target:  5'- gGGGCGCggaGCGCGCgGCAGGUGCGCa-- -3'
miRNA:   3'- gCCCGCG---CGUGCG-CGUCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 3949 0.8 0.09345
Target:  5'- uGGGCGCGUACGCGCgccgcAGGcucUGCAgGAGg -3'
miRNA:   3'- gCCCGCGCGUGCGCG-----UCC---ACGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 105374 0.8 0.09345
Target:  5'- -aGGCG-GCGCGCGCGGGUGCGCGc- -3'
miRNA:   3'- gcCCGCgCGUGCGCGUCCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 121123 0.79 0.095866
Target:  5'- aGGGCGCGgAgGCGCGGGcgcgaGCGCGAGu -3'
miRNA:   3'- gCCCGCGCgUgCGCGUCCa----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 104173 0.79 0.098342
Target:  5'- gCGGGCGC-CGCGCGCGGGUcGUcggGCGGGa -3'
miRNA:   3'- -GCCCGCGcGUGCGCGUCCA-CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 92811 0.79 0.106134
Target:  5'- cCGGGCGCGCGgGCGUGGGaccGCGCGcAGa -3'
miRNA:   3'- -GCCCGCGCGUgCGCGUCCa--CGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 13684 0.78 0.111648
Target:  5'- gGGGCGCGCGgGCGUGGGgcggggcggGCugGGGg -3'
miRNA:   3'- gCCCGCGCGUgCGCGUCCa--------CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 105125 0.78 0.12012
Target:  5'- gCGGGCGCgggccgccgGCGCGCGCAGGUccucgcgGCuCGAGg -3'
miRNA:   3'- -GCCCGCG---------CGUGCGCGUCCA-------CGuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.