Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 90442 | 0.86 | 0.034488 |
Target: 5'- gCGGGCGCGCgcugcacuuugugcGCGCGCAcGUGCGCGAGa -3' miRNA: 3'- -GCCCGCGCG--------------UGCGCGUcCACGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 71970 | 0.81 | 0.078087 |
Target: 5'- gGGGCGCggaGCGCGCgGCAGGUGCGCa-- -3' miRNA: 3'- gCCCGCG---CGUGCG-CGUCCACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 3949 | 0.8 | 0.09345 |
Target: 5'- uGGGCGCGUACGCGCgccgcAGGcucUGCAgGAGg -3' miRNA: 3'- gCCCGCGCGUGCGCG-----UCC---ACGUgCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105374 | 0.8 | 0.09345 |
Target: 5'- -aGGCG-GCGCGCGCGGGUGCGCGc- -3' miRNA: 3'- gcCCGCgCGUGCGCGUCCACGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 121123 | 0.79 | 0.095866 |
Target: 5'- aGGGCGCGgAgGCGCGGGcgcgaGCGCGAGu -3' miRNA: 3'- gCCCGCGCgUgCGCGUCCa----CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 104173 | 0.79 | 0.098342 |
Target: 5'- gCGGGCGC-CGCGCGCGGGUcGUcggGCGGGa -3' miRNA: 3'- -GCCCGCGcGUGCGCGUCCA-CG---UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 92811 | 0.79 | 0.106134 |
Target: 5'- cCGGGCGCGCGgGCGUGGGaccGCGCGcAGa -3' miRNA: 3'- -GCCCGCGCGUgCGCGUCCa--CGUGC-UC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 13684 | 0.78 | 0.111648 |
Target: 5'- gGGGCGCGCGgGCGUGGGgcggggcggGCugGGGg -3' miRNA: 3'- gCCCGCGCGUgCGCGUCCa--------CGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105125 | 0.78 | 0.12012 |
Target: 5'- gCGGGCGCgggccgccgGCGCGCGCAGGUccucgcgGCuCGAGg -3' miRNA: 3'- -GCCCGCG---------CGUGCGCGUCCA-------CGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 100318 | 0.77 | 0.147044 |
Target: 5'- gCGGGCGCGCucgaucuccAgGCGCAGGUuCACGAu -3' miRNA: 3'- -GCCCGCGCG---------UgCGCGUCCAcGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 100724 | 0.77 | 0.150354 |
Target: 5'- gCGGccgcgccGCGCGCGCGCGCGGcGgcgcgcgGCACGAGc -3' miRNA: 3'- -GCC-------CGCGCGUGCGCGUC-Ca------CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 136614 | 0.77 | 0.150726 |
Target: 5'- aGcGGCGCGCGCGCGCcgAGG-GCgGCGGGa -3' miRNA: 3'- gC-CCGCGCGUGCGCG--UCCaCG-UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 57116 | 0.76 | 0.158344 |
Target: 5'- aGGaCGCGCACGCGCAGGguggGCagACGAu -3' miRNA: 3'- gCCcGCGCGUGCGCGUCCa---CG--UGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 89099 | 0.76 | 0.158344 |
Target: 5'- cCGGGCGCGCugGCGCGcgcguGGcacUGCGCGc- -3' miRNA: 3'- -GCCCGCGCGugCGCGU-----CC---ACGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 38945 | 0.76 | 0.158344 |
Target: 5'- cCGGGCGgGCcgcgGCGCGCGGGcUGCGCa-- -3' miRNA: 3'- -GCCCGCgCG----UGCGCGUCC-ACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 59565 | 0.76 | 0.166307 |
Target: 5'- uCGGcGCGCGCGCGCGCcgcagcGGGUGcCGCGc- -3' miRNA: 3'- -GCC-CGCGCGUGCGCG------UCCAC-GUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 16175 | 0.76 | 0.166307 |
Target: 5'- gGGGCGCGgGCgugGCGgGGGUGgGCGGGg -3' miRNA: 3'- gCCCGCGCgUG---CGCgUCCACgUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 51367 | 0.75 | 0.178926 |
Target: 5'- cCGGcGCGgaGUACGCGCAGGccgUGCGCGAa -3' miRNA: 3'- -GCC-CGCg-CGUGCGCGUCC---ACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 64484 | 0.75 | 0.178926 |
Target: 5'- cCGGGUGCaGCGggugGCGCGGGUGCuCGGGg -3' miRNA: 3'- -GCCCGCG-CGUg---CGCGUCCACGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105298 | 0.75 | 0.178926 |
Target: 5'- cCGGGCGCGCGaGCGCGGGguccucGCACu-- -3' miRNA: 3'- -GCCCGCGCGUgCGCGUCCa-----CGUGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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