miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 121056 0.66 0.58779
Target:  5'- gCGGuuGUG-GCGCGCGGuGUGCGCGGc -3'
miRNA:   3'- -GCCcgCGCgUGCGCGUC-CACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 49092 0.66 0.597608
Target:  5'- gCGGGCccGCugaGCGCGCGCAGcaGCuccuCGAGc -3'
miRNA:   3'- -GCCCG--CG---CGUGCGCGUCcaCGu---GCUC- -5'
23740 3' -62.2 NC_005261.1 + 49131 0.66 0.58387
Target:  5'- gCGGGCGgGaccccCGCGCGCAGGUauuuguccgcaaagGCggccacgGCGGGg -3'
miRNA:   3'- -GCCCGCgC-----GUGCGCGUCCA--------------CG-------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 59037 0.66 0.591714
Target:  5'- aCGGGUGCcgccgcgcgagcucaGCGCGCGCGGccGCG-GAGa -3'
miRNA:   3'- -GCCCGCG---------------CGUGCGCGUCcaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 134999 0.66 0.58779
Target:  5'- gGGGCGCcccugGCGCG-GCGGGcccGCACGcGg -3'
miRNA:   3'- gCCCGCG-----CGUGCgCGUCCa--CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 36981 0.66 0.597608
Target:  5'- uCGGuGCGgGCuccagccggaGCcCGCGGGcUGCGCGGGg -3'
miRNA:   3'- -GCC-CGCgCG----------UGcGCGUCC-ACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 978 0.66 0.597608
Target:  5'- gCGGGcCGCGCGCagaGCGgAGGagacggGgGCGGGg -3'
miRNA:   3'- -GCCC-GCGCGUG---CGCgUCCa-----CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 42357 0.66 0.58779
Target:  5'- uGGGCGgGCuggcCGCGCAaacguacuGGUGC-CGGc -3'
miRNA:   3'- gCCCGCgCGu---GCGCGU--------CCACGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 134237 0.66 0.58779
Target:  5'- uCGGcGUgGCGCACGCGCcc-UGCGCGGc -3'
miRNA:   3'- -GCC-CG-CGCGUGCGCGuccACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 100242 0.66 0.58681
Target:  5'- cCGGGCGCacgucuGCcagcccccagucgGCGCGCcGGUggcGCACGAa -3'
miRNA:   3'- -GCCCGCG------CG-------------UGCGCGuCCA---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 66618 0.66 0.637055
Target:  5'- -uGGCGCGCGUGCGCAuG-GCcgACGAGa -3'
miRNA:   3'- gcCCGCGCGUGCGCGUcCaCG--UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 132102 0.66 0.597608
Target:  5'- aGGGCGgcCGCgACGCGCucGUGgaGCGGGa -3'
miRNA:   3'- gCCCGC--GCG-UGCGCGucCACg-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 90735 0.66 0.591714
Target:  5'- uGGGCcgcgccugagGCGCugGCGCGGGacuuccccgaggccGC-CGAGg -3'
miRNA:   3'- gCCCG----------CGCGugCGCGUCCa-------------CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 40727 0.66 0.58779
Target:  5'- gGGGCGCGUggGCGUAGcccaucagcGUGUAUGuGu -3'
miRNA:   3'- gCCCGCGCGugCGCGUC---------CACGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 132156 0.66 0.58779
Target:  5'- uCGaGCGCGCcgcCGCuGCAGGcaGCGCGGGc -3'
miRNA:   3'- -GCcCGCGCGu--GCG-CGUCCa-CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 88376 0.66 0.597608
Target:  5'- aCGGcCGaGCGCGCGCccaAGGUGUaccucgacgGCGAGg -3'
miRNA:   3'- -GCCcGCgCGUGCGCG---UCCACG---------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 33600 0.66 0.58779
Target:  5'- gGGGCG-GCGCcgGCGCGGGcgGCGgggccCGGGg -3'
miRNA:   3'- gCCCGCgCGUG--CGCGUCCa-CGU-----GCUC- -5'
23740 3' -62.2 NC_005261.1 + 76079 0.66 0.597608
Target:  5'- gCGGGCuGCuGCGCcucgugGCGCuGGaGCugGAGa -3'
miRNA:   3'- -GCCCG-CG-CGUG------CGCGuCCaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 2386 0.66 0.58681
Target:  5'- aGcGGCGCGCugGCggcgagcgcgcccGCGGGccccGCGCGGc -3'
miRNA:   3'- gC-CCGCGCGugCG-------------CGUCCa---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 44028 0.66 0.597608
Target:  5'- gCGGGCGgcCGC-CGCGCGGcG-GcCGCGGGc -3'
miRNA:   3'- -GCCCGC--GCGuGCGCGUC-CaC-GUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.