miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 3' -53.5 NC_005261.1 + 80652 0.66 0.954369
Target:  5'- cGAGUagcUGGugugcUCGcGGUGCGCGCcgucGCGGa -3'
miRNA:   3'- -CUCA---ACCuuu--AGU-CCACGCGCG----CGUC- -5'
23744 3' -53.5 NC_005261.1 + 32902 0.66 0.954369
Target:  5'- ----cGGGAGggaAGGgGCGCGCGUGGg -3'
miRNA:   3'- cucaaCCUUUag-UCCaCGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 15049 0.66 0.954369
Target:  5'- -cGggGGggGUCGGG-GuCGCG-GCGGg -3'
miRNA:   3'- cuCaaCCuuUAGUCCaC-GCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 96850 0.66 0.950196
Target:  5'- gGGGUcgacgGGggGcUCGGGggGCGCGgGUAGc -3'
miRNA:   3'- -CUCAa----CCuuU-AGUCCa-CGCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 125377 0.66 0.950196
Target:  5'- aGGGgcgcUGGAA--CGGGUGCGUGCGg-- -3'
miRNA:   3'- -CUCa---ACCUUuaGUCCACGCGCGCguc -5'
23744 3' -53.5 NC_005261.1 + 105126 0.66 0.945776
Target:  5'- ----cGGGcg-CGGGccgccgGCGCGCGCAGg -3'
miRNA:   3'- cucaaCCUuuaGUCCa-----CGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 17449 0.66 0.945776
Target:  5'- gGGGUUGGggGUaGGGgaaacUGCGgGCAGa -3'
miRNA:   3'- -CUCAACCuuUAgUCCac---GCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 97572 0.66 0.941106
Target:  5'- gGGGUUGGc--UCGGuG-GCGCGgGCGGa -3'
miRNA:   3'- -CUCAACCuuuAGUC-CaCGCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 27250 0.67 0.931005
Target:  5'- uGGGgUGGGGcg-GGGUGUGCGgGCAGc -3'
miRNA:   3'- -CUCaACCUUuagUCCACGCGCgCGUC- -5'
23744 3' -53.5 NC_005261.1 + 59073 0.67 0.931005
Target:  5'- ----cGGAGAgcgcgcgCGGGUGCGCcGCGCc- -3'
miRNA:   3'- cucaaCCUUUa------GUCCACGCG-CGCGuc -5'
23744 3' -53.5 NC_005261.1 + 13672 0.67 0.931005
Target:  5'- cGGggGGGGcgCGGG-GCGCGCGgGc -3'
miRNA:   3'- cUCaaCCUUuaGUCCaCGCGCGCgUc -5'
23744 3' -53.5 NC_005261.1 + 70454 0.67 0.925016
Target:  5'- ---cUGGAGgguguacGUCagcccgcgccgcGGGUGCGCGCGCGu -3'
miRNA:   3'- cucaACCUU-------UAG------------UCCACGCGCGCGUc -5'
23744 3' -53.5 NC_005261.1 + 13290 0.67 0.919885
Target:  5'- -uGgcGGGGcgCAGGUGUGCGaCGgGGg -3'
miRNA:   3'- cuCaaCCUUuaGUCCACGCGC-GCgUC- -5'
23744 3' -53.5 NC_005261.1 + 19573 0.67 0.919885
Target:  5'- cGGgcGGuuGAUUcuccagAGGUGCGUGUGCAGg -3'
miRNA:   3'- cUCaaCCu-UUAG------UCCACGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 112847 0.67 0.913943
Target:  5'- ----cGGAGAUC--GUGCaGCGCGCGGa -3'
miRNA:   3'- cucaaCCUUUAGucCACG-CGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 105358 0.67 0.907746
Target:  5'- uGAGgcaGGccguGA-CAGGcgGCGCGCGCGGg -3'
miRNA:   3'- -CUCaa-CCu---UUaGUCCa-CGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 67107 0.67 0.907746
Target:  5'- ----cGGug--CGGGcgGCGCGCGCAGu -3'
miRNA:   3'- cucaaCCuuuaGUCCa-CGCGCGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 98255 0.68 0.901299
Target:  5'- cGGUgcGGcgcGUCAGGcgGCGCGCGCGu -3'
miRNA:   3'- cUCAa-CCuu-UAGUCCa-CGCGCGCGUc -5'
23744 3' -53.5 NC_005261.1 + 12926 0.68 0.887661
Target:  5'- gGGGUUGaGGAugucgUAGGUGCGCuucuggcccGCGCGGc -3'
miRNA:   3'- -CUCAAC-CUUua---GUCCACGCG---------CGCGUC- -5'
23744 3' -53.5 NC_005261.1 + 57186 0.68 0.887661
Target:  5'- gGGGUcggcgGGAAGggGGGgggGgGCGCGCGGg -3'
miRNA:   3'- -CUCAa----CCUUUagUCCa--CgCGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.