miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 97459 0.66 0.714369
Target:  5'- cGGCGGCGcCGGgaucGCCaaaACcgUCGGgGGg -3'
miRNA:   3'- -CCGCCGC-GCCaa--CGGca-UG--AGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 5122 0.66 0.711494
Target:  5'- -uCGGCGCGGgcggcccGCCGgcGCUCgcgcgccucggcccGGCGGg -3'
miRNA:   3'- ccGCCGCGCCaa-----CGGCa-UGAG--------------CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 47396 0.66 0.723909
Target:  5'- gGGCGGCGCcgccccccGUgcacacGCgGUACUccCGGUGGg -3'
miRNA:   3'- -CCGCCGCGc-------CAa-----CGgCAUGA--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32491 0.66 0.752059
Target:  5'- gGGcCGGCGaCGGcgGCa----UCGGCGGg -3'
miRNA:   3'- -CC-GCCGC-GCCaaCGgcaugAGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 102457 0.66 0.742762
Target:  5'- cGGCcucGGCGCGcaGgcGCCGgaccucCUCGGCGc -3'
miRNA:   3'- -CCG---CCGCGC--CaaCGGCau----GAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 53945 0.66 0.770351
Target:  5'- cGCGGCGC----GCCGcGCUC-GCGGg -3'
miRNA:   3'- cCGCCGCGccaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 40239 0.66 0.733377
Target:  5'- -cUGGCcCGGggGCCGUgaGCgccauggCGGCGGc -3'
miRNA:   3'- ccGCCGcGCCaaCGGCA--UGa------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 22670 0.66 0.723909
Target:  5'- gGGCGGCGCccgaGUgccGCCGggggacggGCcCGGCGa -3'
miRNA:   3'- -CCGCCGCGc---CAa--CGGCa-------UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 1413 0.66 0.718194
Target:  5'- cGGCGGCgGCGGggGCgGcgcccgccuccagcACcagCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgCa-------------UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 57844 0.66 0.714369
Target:  5'- cGCgGGCGCGGgcgGCaaGgcCUCGGCGc -3'
miRNA:   3'- cCG-CCGCGCCaa-CGg-CauGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 24125 0.66 0.733377
Target:  5'- aGGCgGGgGUGGggGCUGggugggcgggGCUCaccuGGCGGg -3'
miRNA:   3'- -CCG-CCgCGCCaaCGGCa---------UGAG----CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 77770 0.66 0.723909
Target:  5'- gGGCGGCGgGGacgacgagGCC-UACUacccCGGCGa -3'
miRNA:   3'- -CCGCCGCgCCaa------CGGcAUGA----GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 14535 0.66 0.714369
Target:  5'- cGGUGGCGCGGccGCC-----CGGCGa -3'
miRNA:   3'- -CCGCCGCGCCaaCGGcaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 21198 0.66 0.733377
Target:  5'- cGCGGcCGCGGacGCUGgccccgGCcgcgaCGGCGGg -3'
miRNA:   3'- cCGCC-GCGCCaaCGGCa-----UGa----GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 9628 0.66 0.718194
Target:  5'- aGGCgGGgGUGGggGCUGggugggcggggcccACUCGGgCGGg -3'
miRNA:   3'- -CCG-CCgCGCCaaCGGCa-------------UGAGCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 10902 0.66 0.752059
Target:  5'- cGGCGGCgGCGGcagcGCCGccGC-CGGCc- -3'
miRNA:   3'- -CCGCCG-CGCCaa--CGGCa-UGaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 81200 0.66 0.733377
Target:  5'- cGGCcGCGCGGgcgcgaGCCGgaccaccgugGCgcccgagggCGGCGGg -3'
miRNA:   3'- -CCGcCGCGCCaa----CGGCa---------UGa--------GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 21814 0.66 0.714369
Target:  5'- nGGCcgGGCccgcgGCGGgcGCgCGUGCg-GGCGGg -3'
miRNA:   3'- -CCG--CCG-----CGCCaaCG-GCAUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 132063 0.66 0.751133
Target:  5'- uGGCGGCcgaggucGCGGccGCCGUcgccGCUgCcGCGGa -3'
miRNA:   3'- -CCGCCG-------CGCCaaCGGCA----UGA-GcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 117914 0.66 0.752059
Target:  5'- cGGCuGCGCGGgaacgaagGCCG-GCUgCGGCc- -3'
miRNA:   3'- -CCGcCGCGCCaa------CGGCaUGA-GCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.