miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 73593 0.66 0.714369
Target:  5'- cGGCGGagGCGGcgGCCGcgagCGcGCGGc -3'
miRNA:   3'- -CCGCCg-CGCCaaCGGCaugaGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 28635 0.66 0.723909
Target:  5'- uGGUGGcCGCGGggGagagugaCGagGC-CGGCGGg -3'
miRNA:   3'- -CCGCC-GCGCCaaCg------GCa-UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 14535 0.66 0.714369
Target:  5'- cGGUGGCGCGGccGCC-----CGGCGa -3'
miRNA:   3'- -CCGCCGCGCCaaCGGcaugaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 100815 0.66 0.711494
Target:  5'- gGGCGcGUGCGccugcgccgcccagGCCGggaGCUCGGCGa -3'
miRNA:   3'- -CCGC-CGCGCcaa-----------CGGCa--UGAGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 1294 0.66 0.714369
Target:  5'- cGGCGGgGCucccGUcGCCGg---CGGCGGc -3'
miRNA:   3'- -CCGCCgCGc---CAaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 53945 0.66 0.770351
Target:  5'- cGCGGCGC----GCCGcGCUC-GCGGg -3'
miRNA:   3'- cCGCCGCGccaaCGGCaUGAGcCGCC- -5'
23744 5' -60.3 NC_005261.1 + 34925 0.66 0.714369
Target:  5'- cGCGGCcacGCGGggggcgGCCGgcgcgacccggGCcCGGCGGc -3'
miRNA:   3'- cCGCCG---CGCCaa----CGGCa----------UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 5122 0.66 0.711494
Target:  5'- -uCGGCGCGGgcggcccGCCGgcGCUCgcgcgccucggcccGGCGGg -3'
miRNA:   3'- ccGCCGCGCCaa-----CGGCa-UGAG--------------CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1413 0.66 0.718194
Target:  5'- cGGCGGCgGCGGggGCgGcgcccgccuccagcACcagCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgCa-------------UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 9628 0.66 0.718194
Target:  5'- aGGCgGGgGUGGggGCUGggugggcggggcccACUCGGgCGGg -3'
miRNA:   3'- -CCG-CCgCGCCaaCGGCa-------------UGAGCC-GCC- -5'
23744 5' -60.3 NC_005261.1 + 22670 0.66 0.723909
Target:  5'- gGGCGGCGCccgaGUgccGCCGggggacggGCcCGGCGa -3'
miRNA:   3'- -CCGCCGCGc---CAa--CGGCa-------UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 97459 0.66 0.714369
Target:  5'- cGGCGGCGcCGGgaucGCCaaaACcgUCGGgGGg -3'
miRNA:   3'- -CCGCCGC-GCCaa--CGGca-UG--AGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 36809 0.66 0.714369
Target:  5'- cGGcCGGCGCuacgugccccGGUaUGCgGUGC-CGGCGc -3'
miRNA:   3'- -CC-GCCGCG----------CCA-ACGgCAUGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 59737 0.66 0.714369
Target:  5'- cGGCGGCGCGcg-GCCGccCUCcaccaGGCaGGc -3'
miRNA:   3'- -CCGCCGCGCcaaCGGCauGAG-----CCG-CC- -5'
23744 5' -60.3 NC_005261.1 + 89944 0.66 0.714369
Target:  5'- cGGUGGCGCGGcugGCCGggaucacagUGC-CGcGCGc -3'
miRNA:   3'- -CCGCCGCGCCaa-CGGC---------AUGaGC-CGCc -5'
23744 5' -60.3 NC_005261.1 + 77770 0.66 0.723909
Target:  5'- gGGCGGCGgGGacgacgagGCC-UACUacccCGGCGa -3'
miRNA:   3'- -CCGCCGCgCCaa------CGGcAUGA----GCCGCc -5'
23744 5' -60.3 NC_005261.1 + 21814 0.66 0.714369
Target:  5'- nGGCcgGGCccgcgGCGGgcGCgCGUGCg-GGCGGg -3'
miRNA:   3'- -CCG--CCG-----CGCCaaCG-GCAUGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 129533 0.66 0.714369
Target:  5'- aGGC-GCGCGGgcuacGCCGcaaggUGCaagaCGGCGGg -3'
miRNA:   3'- -CCGcCGCGCCaa---CGGC-----AUGa---GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 32188 0.66 0.710535
Target:  5'- gGGCGGCGCGcgcuggagcuGgcgcccgacgagcUGCCGgcCgCGGCGGu -3'
miRNA:   3'- -CCGCCGCGC----------Ca------------ACGGCauGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 60930 0.66 0.714369
Target:  5'- cGGCGGCgacccGCGG--GCCGUgGCcCGaGCGGc -3'
miRNA:   3'- -CCGCCG-----CGCCaaCGGCA-UGaGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.