miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23744 5' -60.3 NC_005261.1 + 71 0.7 0.510572
Target:  5'- cGGCGcGCGCGGggGCgggGUGCggGGCGc -3'
miRNA:   3'- -CCGC-CGCGCCaaCGg--CAUGagCCGCc -5'
23744 5' -60.3 NC_005261.1 + 261 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 297 0.75 0.261827
Target:  5'- cGGCGGCuGCGGcgGCgGcUGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgC-AUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 333 0.69 0.568788
Target:  5'- cGGCGGCuGCGGcgGCCcgcagcccggcgcgGCcCGGCGGn -3'
miRNA:   3'- -CCGCCG-CGCCaaCGGca------------UGaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 373 0.72 0.380203
Target:  5'- cGGUGGCgGCGGUgGCgGcgGCggCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCAaCGgCa-UGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 446 0.7 0.492012
Target:  5'- gGGaCGGgGaCGGggGCCGcgACggcCGGCGGg -3'
miRNA:   3'- -CC-GCCgC-GCCaaCGGCa-UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 519 0.68 0.626545
Target:  5'- gGGagGGCGCGGgcggGCgGgggGCagGGCGGa -3'
miRNA:   3'- -CCg-CCGCGCCaa--CGgCa--UGagCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1062 0.72 0.421211
Target:  5'- aGCGGCGCGGgggGCUGgccccGCUCcagGGCGa -3'
miRNA:   3'- cCGCCGCGCCaa-CGGCa----UGAG---CCGCc -5'
23744 5' -60.3 NC_005261.1 + 1294 0.66 0.714369
Target:  5'- cGGCGGgGCucccGUcGCCGg---CGGCGGc -3'
miRNA:   3'- -CCGCCgCGc---CAaCGGCaugaGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1413 0.66 0.718194
Target:  5'- cGGCGGCgGCGGggGCgGcgcccgccuccagcACcagCGGCGGc -3'
miRNA:   3'- -CCGCCG-CGCCaaCGgCa-------------UGa--GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 1596 0.73 0.349376
Target:  5'- uGGCGGCGCGGUggcugGCCGc-CUCGcccuccGCGa -3'
miRNA:   3'- -CCGCCGCGCCAa----CGGCauGAGC------CGCc -5'
23744 5' -60.3 NC_005261.1 + 1694 0.68 0.616709
Target:  5'- cGCGGCagcacGCGc-UGCCgGUACUCGcGCGGc -3'
miRNA:   3'- cCGCCG-----CGCcaACGG-CAUGAGC-CGCC- -5'
23744 5' -60.3 NC_005261.1 + 1804 0.67 0.695103
Target:  5'- cGGCGGCGCcccggGGUagaGCCGcGCguaagcggccUCGGCGc -3'
miRNA:   3'- -CCGCCGCG-----CCAa--CGGCaUG----------AGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 1951 0.66 0.746492
Target:  5'- cGCGGCGCGcagguacacGUgcgccugcccgacgGCCGggccaUCGGCGGc -3'
miRNA:   3'- cCGCCGCGC---------CAa-------------CGGCaug--AGCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 2396 0.69 0.567819
Target:  5'- uGGCGGCgagcgcgcccGCGGgccCCGcGCggCGGCGGg -3'
miRNA:   3'- -CCGCCG----------CGCCaacGGCaUGa-GCCGCC- -5'
23744 5' -60.3 NC_005261.1 + 2465 0.7 0.529418
Target:  5'- aGGCGaGCGcCGGgcGCCaggGCUCGG-GGa -3'
miRNA:   3'- -CCGC-CGC-GCCaaCGGca-UGAGCCgCC- -5'
23744 5' -60.3 NC_005261.1 + 2555 0.75 0.255888
Target:  5'- cGGCgcugGGCGCGGgcgUGUgGUACUCcccgGGCGGc -3'
miRNA:   3'- -CCG----CCGCGCCa--ACGgCAUGAG----CCGCC- -5'
23744 5' -60.3 NC_005261.1 + 2612 0.7 0.482849
Target:  5'- cGGCGGCGgGGccGCCGgg--CGGCa- -3'
miRNA:   3'- -CCGCCGCgCCaaCGGCaugaGCCGcc -5'
23744 5' -60.3 NC_005261.1 + 2687 0.66 0.733377
Target:  5'- cGGCGGCGCGccgGCUuuugGC-CGGCGc -3'
miRNA:   3'- -CCGCCGCGCcaaCGGca--UGaGCCGCc -5'
23744 5' -60.3 NC_005261.1 + 2744 0.7 0.529418
Target:  5'- uGCGcCGCGGcggGCCGUcg-CGGCGGg -3'
miRNA:   3'- cCGCcGCGCCaa-CGGCAugaGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.